C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041375 Ccdc9 10090 - 7:16274042-16286795 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041010 Ccdc9-001 16275464-16285059 protein_coding
  ENSMUST00000118976 Ccdc9-002 16274045-16286790 protein_coding
  ENSMUST00000124084 Ccdc9-003 16275477-16280697 retained_intron
  ENSMUST00000129447 Ccdc9-010 16276594-16281166 retained_intron
  ENSMUST00000131963 Ccdc9-012 16276015-16276697 retained_intron
  ENSMUST00000137993 Ccdc9-009 16280626-16281806 processed_transcript
  ENSMUST00000144186 Ccdc9-006 16282691-16286773 retained_intron
  ENSMUST00000145519 Ccdc9-008 16282824-16286025 protein_coding
  ENSMUST00000146085 Ccdc9-013 16275870-16278384 protein_coding
  ENSMUST00000146609 Ccdc9-004 16282755-16286795 protein_coding
  ENSMUST00000148741 Ccdc9-007 16282510-16286780 nonsense_mediated_decay
  ENSMUST00000150528 Ccdc9-005 16282570-16286774 protein_coding
  ENSMUST00000172670 Ccdc9-011 16274042-16275771 retained_intron
  ENSMUST00000174270 Ccdc9-014 16282519-16285536 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000041010ENSMUST00000118976ENSMUST00000124084ENSMUST00000129447ENSMUST00000131963ENSMUST00000144186ENSMUST00000146085
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000041010 N/A 4.050±0.38 N/A 5.941±1.54 4.280±0.44 7.388±1.08 1.521±0.00 2.317±0.46 2.292±1.29 4.954±2.40 4.230±1.68 4.969±0.63
ENSMUST00000118976 N/A 2.591±0.39 4.622±0.00 6.151±1.70 2.292±0.09 3.412±0.27 2.397±0.00 1.422±0.00 1.380±0.82 2.070±0.31 3.797±1.29 5.086±1.66
ENSMUST00000124084 2.885±0.46 2.363±0.36 N/A N/A 2.854±0.23 3.568±0.24 0.877±0.00 1.407±0.23 1.583±0.73 2.820±0.36 N/A N/A
ENSMUST00000129447 N/A 3.930±0.00 N/A 26.115±0.00 5.254±0.70 13.641±1.66 N/A N/A N/A 13.747±10.13 15.159±1.67 N/A
ENSMUST00000131963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.601±0.00 N/A
ENSMUST00000144186 N/A N/A N/A 49.751±0.00 N/A N/A N/A N/A N/A 91.437±0.00 54.258±7.43 64.532±0.00
ENSMUST00000146085 N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.101±0.00 20.671±0.00 45.227±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G1 CIL_0008G1_0002 VISTA 7:16104746-16706411

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004636 ccdc9 coiled-coil domain containing 9 protein_coding Danio_rerio
ENSG00000105321 CCDC9 coiled-coil domain containing 9 protein_coding Homo_sapiens

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