C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041010 Ccdc9-001 ENSMUSG00000041375 10090 - 7:16275464-16285059 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000041010
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000041010 4.050±0.38 5.941±1.54 4.280±0.44 7.388±1.08 1.521±0.00 2.317±0.46 2.292±1.29 4.954±2.40 4.230±1.68 4.969±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G1 CIL_0008G1_0002 VISTA 7:16104746-16706411

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221922 CCDC9-001 protein_coding Homo_sapiens 0 1190
ENST00000595659 CCDC9-004 protein_coding Homo_sapiens 0 220
ENST00000596938 CCDC9-005 protein_coding Homo_sapiens 0 202
ENST00000599398 CCDC9-003 protein_coding Homo_sapiens 0 392
ENST00000600117 CCDC9-006 retained_intron Homo_sapiens 0 331

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