C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, alpha 2/delta subunit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037434 Cacna2d4-001 ENSMUSG00000041460 10090 + 6:119236526-119352407 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000037434
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000037434 0.045±0.00 0.032±0.02 0.203±0.15 0.044±0.02 0.018±0.00 0.043±0.02 0.015±0.01 0.534±0.00 0.328±0.00 0.057±0.02 0.021±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XJ CIL_0003XJ_0003 CGP 6:119236526-119352407

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IEA voltage-gated calcium channel activity
GO:0005891 IEA voltage-gated calcium channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0046872 IEA metal ion binding
GO:0050908 IEA detection of light stimulus involved in visual perception
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000280663 CACNA2D4-002 retained_intron Homo_sapiens 0 2734
ENST00000382722 CACNA2D4-001 protein_coding Homo_sapiens 0 3147
ENST00000444595 CACNA2D4-003 nonsense_mediated_decay Homo_sapiens 0 1561
ENST00000536846 CACNA2D4-019 protein_coding Homo_sapiens 0 686
ENST00000537784 CACNA2D4-005 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000538027 CACNA2D4-018 protein_coding Homo_sapiens 0 708
ENST00000538450 CACNA2D4-006 protein_coding Homo_sapiens 0 640
ENST00000541444 CACNA2D4-015 retained_intron Homo_sapiens 0 361
ENST00000543405 CACNA2D4-014 retained_intron Homo_sapiens 0 305
ENST00000545595 CACNA2D4-004 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000585385 CACNA2D4-009 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000585708 CACNA2D4-026 protein_coding Homo_sapiens 0 3035
ENST00000585732 CACNA2D4-023 protein_coding Homo_sapiens 0 628
ENST00000586184 CACNA2D4-025 protein_coding Homo_sapiens 0 3092
ENST00000587995 CACNA2D4-022 protein_coding Homo_sapiens 0 1561
ENST00000588077 CACNA2D4-024 protein_coding Homo_sapiens 0 3090
ENST00000588896 CACNA2D4-020 retained_intron Homo_sapiens 0 193
ENST00000611131 CACNA2D4-201 protein_coding Homo_sapiens 0 3147

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