C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paired related homeobox protein-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041730 Prrxl1 10090 + 14:32599407-32649246 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000068938 Prrxl1-004 32599867-32649246 protein_coding
  ENSMUST00000186452 Prrxl1-003 32599541-32630302 protein_coding
  ENSMUST00000187377 Prrxl1-001 32599407-32649204 protein_coding
  ENSMUST00000189022 Prrxl1-002 32599408-32630326 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000068938ENSMUST00000186452ENSMUST00000187377ENSMUST00000189022
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000068938 N/A N/A N/A 0.026±0.00 0.091±0.00 0.036±0.00 N/A 0.012±0.00 0.189±0.01 0.008±0.00 0.021±0.00 N/A
ENSMUST00000186452 N/A 0.243±0.15 0.161±0.00 N/A N/A N/A N/A N/A N/A 0.002±0.00 N/A N/A
ENSMUST00000187377 N/A 0.227±0.15 N/A 0.040±0.00 N/A N/A 0.018±0.00 0.006±0.00 0.130±0.07 0.018±0.00 0.013±0.01 N/A
ENSMUST00000189022 0.013±0.00 0.523±0.27 0.525±0.46 0.016±0.00 0.023±0.00 N/A N/A 0.003±0.00 0.064±0.01 0.041±0.04 N/A 0.013±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084A CIL_00084A_0002 VISTA 14:32298253-32899721
CIL_0008ZL CIL_0008ZL_0002 VISTA 14:32470674-33071522
CIL_00002R CIL_00002R_0002 CGP 14:32513521-32649246
CIL_0007OS CIL_0007OS_0003 UCNEbase 14:32546905-33068248
CIL_0004VW CIL_0004VW_0002 CGP 14:32599407-32685272

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001764 IMP neuron migration
GO:0003677 IDA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007399 IMP nervous system development
GO:0007409 IMP axonogenesis
GO:0007411 IMP axon guidance
GO:0009593 IMP detection of chemical stimulus
GO:0016048 IMP detection of temperature stimulus
GO:0021516 IMP dorsal spinal cord development
GO:0021559 IMP trigeminal nerve development
GO:0030182 IMP neuron differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0050954 IMP sensory perception of mechanical stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069329 drgx dorsal root ganglia homeobox protein_coding Danio_rerio
ENSG00000165606 DRGX dorsal root ganglia homeobox protein_coding Homo_sapiens

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