C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008ZL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs753 VISTA 9606 10:48905403-49506260
GeneTranscriptPositionBiotype
ENSG00000128815 (WDFY4)
WDFY family member 4 		ENST00000265453 (WDFY4-002) 48821093-48982956 protein_coding
ENST00000325239 (WDFY4-201) 48709706-48982955 protein_coding
ENST00000360890 (WDFY4-008) 48684876-48736242 protein_coding
ENST00000374161 (WDFY4-006) 48802738-48824169 protein_coding
ENST00000465910 (WDFY4-003) 48946047-48982956 processed_transcript
ENST00000490507 (WDFY4-005) 48978345-48982956 processed_transcript
ENST00000497480 (WDFY4-004) 48968984-48976959 processed_transcript
ENSG00000165383 (LRRC18)
leucine rich repeat containing 18 		ENST00000298124 (LRRC18-201) 48909488-48935190 protein_coding
ENST00000374160 (LRRC18-001) 48909483-48914232 protein_coding
ENSG00000165606 (DRGX)
dorsal root ganglia homeobox 		ENST00000374139 (DRGX-001) 49364181-49395451 protein_coding
ENST00000434016 (DRGX-201) 49366116-49396016 protein_coding
ENSG00000172538 (FAM170B)
family with sequence similarity 170, member B 		ENST00000311787 (FAM170B-001) 49131154-49134008 protein_coding
ENSG00000177354 (C10orf71)
chromosome 10 open reading frame 71 		ENST00000374144 (C10orf71-001) 49299193-49327487 protein_coding
ENST00000470615 (C10orf71-002) 49299274-49316247 processed_transcript
ENSG00000204161 (C10orf128)
chromosome 10 open reading frame 128 		ENST00000374148 (C10orf128-002) 49160348-49188391 protein_coding
ENST00000374151 (C10orf128-201) 49154725-49188400 protein_coding
ENST00000374153 (C10orf128-003) 49154753-49188376 protein_coding
ENST00000374156 (C10orf128-001) 49154728-49178401 nonsense_mediated_decay
ENST00000453436 (C10orf128-005) 49155768-49188312 protein_coding
ENST00000470884 (C10orf128-006) 49166768-49188585 processed_transcript
ENST00000474718 (C10orf128-004) 49155612-49188359 protein_coding
ENST00000488276 (C10orf128-007) 49155569-49166993 processed_transcript
ENSG00000225830 (ERCC6)
excision repair cross-complementation group 6 		ENST00000355832 (ERCC6-001) 49455368-49539026 protein_coding
ENST00000462247 (ERCC6-005) 49530724-49539538 protein_coding
ENST00000465653 (ERCC6-002) 49460024-49470281 processed_transcript
ENST00000475116 (ERCC6-003) 49483368-49505999 processed_transcript
ENST00000479652 (ERCC6-004) 49524936-49530737 processed_transcript
ENST00000623073 (ERCC6-009) 49456655-49506480 nonsense_mediated_decay
ENST00000623115 (ERCC6-006) 49458788-49502122 protein_coding
ENST00000623318 (ERCC6-007) 49483386-49502157 protein_coding
ENST00000623788 (ERCC6-008) 49500660-49506408 retained_intron
ENST00000624341 (ERCC6-010) 49455368-49476258 nonsense_mediated_decay
ENSG00000233665 (RP11-523O18.5)
 ENST00000428825 (RP11-523O18.5-001) 48976554-48993046 antisense
ENST00000610464 (RP11-523O18.5-002) 48976742-48980115 retained_intron
ENSG00000235939 (RP11-123B3.2)
 ENST00000423283 (RP11-123B3.2-001) 49419277-49472903 antisense
ENSG00000236208 (C10orf71-AS1)
C10orf71 antisense RNA 1 		ENST00000437677 (C10orf71-AS1-001) 49296112-49298780 antisense
ENST00000442700 (C10orf71-AS1-002) 49296450-49299018 antisense
ENSG00000241577 (RP11-523O18.7)
 ENST00000430438 (RP11-523O18.7-001) 48883955-48935213 sense_overlapping

Homo sapiens Ensembl (GRCh38)

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Genes
Structures from Ensembl
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Transcripts
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CIL_0008ZL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs753 VISTA 10090 14:32470674-33071522
GeneTranscriptPositionBiotype
ENSMUSG00000041673 (Lrrc18)
leucine rich repeat containing 18 		ENSMUST00000038956 (Lrrc18-001) 32991382-33015292 protein_coding
ENSMUST00000120588 (Lrrc18-005) 32991403-33008678 protein_coding
ENSMUST00000120866 (Lrrc18-002) 32991398-33009396 protein_coding
ENSMUST00000120951 (Lrrc18-006) 32991458-33014155 protein_coding
ENSMUST00000123822 (Lrrc18-004) 32991446-33008839 protein_coding
ENSMUST00000123910 (Lrrc18-003) 32995265-33008459 processed_transcript
ENSMUSG00000041707 (1810011H11Rik)
RIKEN cDNA 1810011H11 gene 		ENSMUST00000039191 (1810011H11Rik-201) 32785963-32817968 protein_coding
ENSMUSG00000041730 (Prrxl1)
paired related homeobox protein-like 1 		ENSMUST00000068938 (Prrxl1-004) 32599867-32649246 protein_coding
ENSMUST00000186452 (Prrxl1-003) 32599541-32630302 protein_coding
ENSMUST00000187377 (Prrxl1-001) 32599407-32649204 protein_coding
ENSMUST00000189022 (Prrxl1-002) 32599408-32630326 protein_coding
ENSMUSG00000050666 (Vstm4)
V-set and transmembrane domain containing 4 		ENSMUST00000053175 (Vstm4-001) 32856756-32939487 protein_coding
ENSMUST00000100721 (Vstm4-002) 32856789-32939487 protein_coding
ENSMUSG00000051506 (Wdfy4)
WD repeat and FYVE domain containing 4 		ENSMUST00000061753 (Wdfy4-201) 32959547-33185066 protein_coding
ENSMUST00000130509 (Wdfy4-001) 32959570-33185066 protein_coding
ENSMUST00000132153 (Wdfy4-002) 33018284-33023337 protein_coding
ENSMUST00000159606 (Wdfy4-003) 33162749-33185508 protein_coding
ENSMUSG00000054051 (Ercc6)
excision repair cross-complementing rodent repair deficiency, complementation group 6 		ENSMUST00000066807 (Ercc6-201) 32513521-32580989 protein_coding
ENSMUSG00000071540 (3425401B19Rik)
RIKEN cDNA 3425401B19 gene 		ENSMUST00000096038 (3425401B19Rik-201) 32659119-32685272 protein_coding
ENSMUSG00000078127 (Fam170b)
family with sequence similarity 170, member B 		ENSMUST00000104926 (Fam170b-201) 32833962-32836789 protein_coding
ENSMUSG00000097794 (Gm2990)
predicted gene 2990 		ENSMUST00000180662 (Gm2990-201) 32465042-32483539 lincRNA
ENSMUSG00000098236 (Gm7734)
predicted gene 7734 		ENSMUST00000182832 (Gm7734-001) 32897719-32898729 processed_pseudogene
ENSMUSG00000101086 (RP23-56C21.2)
predicted gene 28651 		ENSMUST00000185335 (RP23-56C21.2-001) 32685648-32687516 lincRNA

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008ZL_0001ENSG00000128815ENST00000265453ENST00000325239ENST00000360890ENST00000374161ENST00000465910ENST00000490507ENST00000497480ENSG00000165383ENST00000298124ENST00000374160ENSG00000165606ENST00000374139ENSG00000172538ENST00000311787ENSG00000177354ENST00000374144ENSG00000204161ENST00000374148ENST00000374151ENST00000374153ENST00000374156ENST00000453436ENST00000474718ENST00000488276ENSG00000225830ENST00000355832ENST00000623073ENST00000623115ENST00000624341ENSG00000233665ENST00000428825ENSG00000235939ENST00000423283ENSG00000236208ENST00000437677ENST00000442700ENSG00000241577ENST00000430438CIL_0008ZL_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128815 ENST00000265453 N/A 5.803±0.00 0.242±0.00 0.335±0.00 0.514±0.16 0.269±0.16 0.114±0.00 0.347±0.29 0.064±0.00 0.846±0.08 0.117±0.05 0.395±0.14 0.779±0.12 2.302±0.51
ENST00000325239 N/A N/A N/A N/A 0.274±0.09 N/A 0.095±0.00 0.161±0.00 0.052±0.00 0.215±0.00 0.097±0.00 0.125±0.06 0.366±0.00 N/A
ENST00000360890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.209±0.00 0.222±0.00 N/A N/A
ENST00000374161 0.203±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465910 N/A 3.200±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A 0.861±0.00
ENST00000490507 N/A N/A N/A N/A N/A 0.735±0.00 N/A N/A N/A N/A N/A 0.955±0.00 N/A N/A
ENST00000497480 N/A N/A N/A N/A N/A 0.446±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165383 ENST00000298124 N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A 1.601±0.00 N/A 0.188±0.18 N/A 1.057±0.00
ENST00000374160 0.017±0.00 0.043±0.00 0.030±0.00 0.081±0.00 0.017±0.00 N/A N/A 0.026±0.00 0.159±0.00 0.922±0.00 N/A 0.010±0.00 N/A N/A
ENSG00000165606 ENST00000374139 N/A N/A N/A 0.129±0.00 0.017±0.00 N/A N/A N/A N/A 0.091±0.00 N/A 0.060±0.00 N/A 0.048±0.04
ENST00000434016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000172538 ENST00000311787 0.077±0.00 0.116±0.00 N/A 0.119±0.00 N/A N/A N/A N/A N/A 0.191±0.00 N/A 0.038±0.00 N/A 3.148±0.08
ENSG00000177354 ENST00000374144 0.032±0.00 0.046±0.00 0.016±0.00 0.012±0.01 3.043±0.00 0.034±0.00 22.939±0.00 0.056±0.05 0.074±0.07 0.017±0.01 64.378±0.00 0.027±0.02 0.018±0.00 0.588±0.57
ENST00000470615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000204161 ENST00000374148 N/A N/A N/A N/A N/A 0.923±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000374151 N/A N/A N/A 0.879±0.00 N/A N/A 0.769±0.00 0.432±0.00 N/A 0.869±0.00 N/A 0.863±0.00 N/A 0.526±0.00
ENST00000374153 5.369±0.00 13.008±0.00 N/A 2.489±1.87 8.407±0.00 3.311±0.00 6.039±0.00 1.274±0.00 1.149±0.00 3.495±0.00 1.561±0.00 0.759±0.02 2.992±0.60 2.274±1.70
ENST00000374156 0.974±0.00 2.402±0.00 0.317±0.00 N/A 1.560±0.00 1.111±0.40 1.270±0.32 0.196±0.00 1.280±0.00 3.004±1.81 N/A 0.460±0.09 0.555±0.00 0.166±0.00
ENST00000453436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.532±0.00 N/A N/A N/A
ENST00000470884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474718 N/A N/A 6.622±0.00 7.811±0.00 10.714±0.00 9.528±0.00 2.787±0.00 4.573±0.00 8.462±0.00 31.793±0.00 1.027±0.00 3.009±0.95 6.580±0.00 1.501±0.00
ENST00000488276 N/A N/A 2.646±0.00 3.224±0.00 7.161±0.00 N/A N/A N/A 6.100±5.24 N/A 1.664±0.00 0.744±0.00 5.089±0.00 N/A
ENSG00000225830 ENST00000355832 N/A 0.224±0.00 0.463±0.00 0.393±0.15 0.346±0.00 0.769±0.00 0.467±0.09 1.221±0.06 0.964±0.76 0.371±0.10 0.702±0.42 0.731±0.51 0.744±0.61 0.904±0.23
ENST00000462247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623073 N/A 0.118±0.00 N/A N/A N/A N/A 0.163±0.00 0.238±0.00 N/A 0.818±0.00 N/A 0.709±0.00 N/A N/A
ENST00000623115 0.793±0.00 N/A N/A 0.471±0.00 0.739±0.31 0.623±0.09 N/A N/A N/A 0.893±0.00 N/A 0.736±0.18 0.358±0.00 2.361±0.10
ENST00000623318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624341 N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A 0.184±0.00 1.284±0.00 N/A N/A
ENSG00000233665 ENST00000428825 0.414±0.00 N/A N/A 0.442±0.00 N/A 0.273±0.00 0.182±0.00 N/A 0.136±0.00 N/A 0.108±0.00 N/A N/A N/A
ENST00000610464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235939 ENST00000423283 N/A 0.038±0.00 N/A N/A 0.229±0.00 N/A N/A N/A N/A N/A N/A 0.149±0.03 0.058±0.00 N/A
ENSG00000236208 ENST00000437677 N/A N/A N/A N/A 0.233±0.00 N/A 2.090±1.40 N/A N/A N/A 1.501±1.42 N/A N/A N/A
ENST00000442700 N/A N/A N/A N/A 0.422±0.00 N/A 2.408±0.00 N/A N/A N/A 5.619±5.20 N/A 0.214±0.00 N/A
ENSG00000241577 ENST00000430438 N/A 0.208±0.00 N/A N/A N/A N/A 0.404±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041673 ENSMUST00000038956 0.069±0.00 0.051±0.00 0.040±0.00 0.052±0.00 0.149±0.05 0.102±0.04 0.040±0.01 0.089±0.03 0.023±0.01 N/A 0.021±0.01 0.465±0.26 0.093±0.06 14.461±0.00
ENSMUST00000120588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000120866 0.678±0.40 0.199±0.05 N/A 0.041±0.00 0.204±0.13 0.198±0.04 0.173±0.07 0.237±0.18 0.053±0.03 0.568±0.26 0.045±0.00 2.118±0.67 0.291±0.10 296.301±72.13
ENSMUST00000120951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A 0.171±0.00 N/A
ENSMUST00000123822 N/A N/A N/A N/A 0.137±0.01 0.230±0.00 N/A 0.203±0.00 0.064±0.04 N/A 0.072±0.00 N/A 0.252±0.00 N/A
ENSMUST00000123910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041707 ENSMUST00000039191 1.692±0.82 0.949±0.19 1.394±0.01 0.155±0.09 1.217±0.44 0.663±0.32 0.334±0.11 0.383±0.12 0.617±0.32 1.137±0.39 0.071±0.05 0.780±0.42 0.344±0.17 0.144±0.00
ENSMUSG00000041730 ENSMUST00000068938 N/A N/A N/A N/A 0.026±0.00 0.091±0.00 0.036±0.00 N/A 0.012±0.00 N/A 0.189±0.01 0.008±0.00 0.021±0.00 N/A
ENSMUST00000186452 N/A 0.243±0.15 N/A 0.161±0.00 N/A N/A N/A N/A N/A N/A N/A 0.002±0.00 N/A N/A
ENSMUST00000187377 N/A 0.227±0.15 N/A N/A 0.040±0.00 N/A N/A 0.018±0.00 0.006±0.00 N/A 0.130±0.07 0.018±0.00 0.013±0.01 N/A
ENSMUST00000189022 0.013±0.00 0.523±0.27 N/A 0.525±0.46 0.016±0.00 0.023±0.00 N/A N/A 0.003±0.00 N/A 0.064±0.01 0.041±0.04 N/A 0.013±0.00
ENSMUSG00000050666 ENSMUST00000053175 6.181±0.83 7.707±0.72 7.757±0.59 1.167±0.67 2.160±0.36 2.015±0.18 3.877±0.33 4.439±0.44 1.335±0.95 7.595±2.66 0.487±0.12 6.940±2.82 12.309±4.77 2.539±1.05
ENSMUST00000100721 N/A N/A 1.246±0.00 0.326±0.03 0.654±0.00 N/A N/A N/A 0.150±0.00 N/A 0.237±0.12 4.492±1.74 10.326±3.35 0.222±0.00
ENSMUSG00000051506 ENSMUST00000061753 N/A 0.091±0.00 N/A 0.031±0.00 N/A N/A 0.087±0.00 0.080±0.00 N/A N/A 0.079±0.02 N/A 0.074±0.02 N/A
ENSMUST00000130509 0.282±0.00 0.453±0.37 0.443±0.00 0.117±0.00 0.680±0.00 0.651±0.19 0.315±0.05 0.413±0.19 0.219±0.18 4.474±0.00 0.067±0.02 1.004±0.32 0.109±0.03 0.382±0.02
ENSMUST00000132153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000054051 ENSMUST00000066807 0.659±0.26 2.054±0.54 1.818±1.49 4.407±2.42 1.890±0.35 1.608±0.83 0.677±0.12 1.980±0.31 1.758±0.82 1.442±0.24 0.670±0.23 2.738±0.84 2.046±1.15 1.935±0.53
ENSMUSG00000071540 ENSMUST00000096038 0.076±0.05 0.020±0.00 0.128±0.06 0.025±0.02 1.476±1.87 0.066±0.03 7.634±1.08 0.283±0.16 0.013±0.01 0.421±0.26 31.253±4.12 0.137±0.10 0.283±0.36 0.025±0.01
ENSMUSG00000078127 ENSMUST00000104926 0.055±0.03 0.136±0.07 0.047±0.00 0.015±0.01 0.037±0.02 0.054±0.02 0.111±0.02 0.074±0.02 0.043±0.02 0.128±0.03 N/A 0.131±0.08 0.125±0.07 83.877±17.33
ENSMUSG00000097794 ENSMUST00000180662 N/A N/A N/A 0.243±0.13 N/A 0.070±0.00 0.066±0.00 0.035±0.00 0.009±0.00 N/A N/A N/A N/A 0.114±0.07
ENSMUSG00000098236 ENSMUST00000182832 0.119±0.04 0.083±0.00 0.027±0.00 0.024±0.00 0.272±0.16 N/A 0.046±0.02 0.044±0.02 0.047±0.04 0.093±0.07 N/A 0.194±0.08 0.051±0.02 0.103±0.00
ENSMUSG00000101086 ENSMUST00000185335 N/A N/A 0.023±0.01 0.048±0.00 0.459±0.09 0.188±0.07 1.361±0.46 N/A 0.037±0.00 N/A 3.178±0.71 0.176±0.00 0.139±0.05 0.055±0.00

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