C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired related homeobox protein-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000189022 Prrxl1-002 ENSMUSG00000041730 10090 + 14:32599408-32630326 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverMuscleOvaryTestisENSMUST00000189022
Transcript ID Adipose Adrenal Brain Breast Colon Liver Muscle Ovary Testis
ENSMUST00000189022 0.013±0.00 0.523±0.27 0.525±0.46 0.016±0.00 0.023±0.00 0.003±0.00 0.064±0.01 0.041±0.04 0.013±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084A CIL_00084A_0002 VISTA 14:32298253-32899721
CIL_0008ZL CIL_0008ZL_0002 VISTA 14:32470674-33071522
CIL_00002R CIL_00002R_0002 CGP 14:32513521-32649246
CIL_0007OS CIL_0007OS_0003 UCNEbase 14:32546905-33068248
CIL_0004VW CIL_0004VW_0002 CGP 14:32599407-32685272

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IMP neuron migration
GO:0003677 IDA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007399 IMP nervous system development
GO:0007409 IMP axonogenesis
GO:0007411 IMP axon guidance
GO:0009593 IMP detection of chemical stimulus
GO:0016048 IMP detection of temperature stimulus
GO:0021516 IMP dorsal spinal cord development
GO:0021559 IMP trigeminal nerve development
GO:0030182 IMP neuron differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0050954 IMP sensory perception of mechanical stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000374139 DRGX-001 protein_coding Homo_sapiens 0 1099
ENST00000434016 DRGX-201 protein_coding Homo_sapiens 0 1101

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