C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041740 Rnf10 10090 - 5:115241412-115272898 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040555 Rnf10-003 115241770-115272892 protein_coding
  ENSMUST00000112096 Rnf10-001 115241771-115272894 protein_coding
  ENSMUST00000112097 Rnf10-002 115241412-115272898 protein_coding
  ENSMUST00000128954 Rnf10-007 115243692-115246075 retained_intron
  ENSMUST00000133276 Rnf10-006 115251293-115255627 retained_intron
  ENSMUST00000139853 Rnf10-009 115241779-115272301 nonsense_mediated_decay
  ENSMUST00000151085 Rnf10-005 115251314-115260226 processed_transcript
  ENSMUST00000152613 Rnf10-004 115248693-115249487 processed_transcript
  ENSMUST00000153553 Rnf10-008 115241775-115242689 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040555ENSMUST00000112096ENSMUST00000139853ENSMUST00000151085
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040555 16.355±4.99 22.065±0.00 10.288±1.22 13.393±1.81 13.188±5.18 9.034±0.00 12.925±1.65 8.702±1.26 10.165±4.61 10.779±1.60 13.352±2.16 19.300±7.19 8.452±3.19 20.849±5.35
ENSMUST00000112096 59.145±6.72 51.145±37.15 58.755±0.96 48.960±17.18 47.962±19.24 30.293±7.72 57.145±5.58 46.615±6.81 41.098±25.67 40.187±12.56 69.775±5.52 43.251±20.13 35.577±10.35 70.160±35.57
ENSMUST00000139853 N/A N/A N/A 9.044±0.00 16.865±0.00 N/A N/A N/A N/A N/A N/A 36.549±17.45 5.297±0.00 14.701±0.00
ENSMUST00000151085 N/A N/A N/A N/A 53.654±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZA CIL_0007ZA_0002 VISTA 5:114966986-115567561
CIL_0009CQ CIL_0009CQ_0002 VISTA 5:115188390-115791906

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0010626 ISS negative regulation of Schwann cell proliferation
GO:0031643 ISS positive regulation of myelination
GO:0044212 ISS transcription regulatory region DNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0051865 IEA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079687 rnf10 ring finger protein 10 protein_coding Danio_rerio
ENSG00000022840 RNF10 ring finger protein 10 protein_coding Homo_sapiens

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