C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000022840 RNF10 9606 + 12:120533480-120577594 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000325954 RNF10-001 120534351-120577594 protein_coding
  ENST00000366112 RNF10-010 120565096-120574938 retained_intron
  ENST00000413266 RNF10-002 120534812-120576886 protein_coding
  ENST00000535395 RNF10-019 120563748-120565527 retained_intron
  ENST00000535417 RNF10-025 120554350-120557368 retained_intron
  ENST00000535470 RNF10-014 120565436-120576882 processed_transcript
  ENST00000536869 RNF10-026 120534872-120557619 nonsense_mediated_decay
  ENST00000537376 RNF10-015 120560839-120563224 retained_intron
  ENST00000537740 RNF10-016 120560726-120563456 protein_coding
  ENST00000537997 RNF10-022 120535426-120552666 protein_coding
  ENST00000538254 RNF10-029 120565484-120576886 protein_coding
  ENST00000538796 RNF10-023 120534588-120557596 nonsense_mediated_decay
  ENST00000539486 RNF10-007 120533480-120534836 protein_coding
  ENST00000540046 RNF10-020 120563455-120566942 protein_coding
  ENST00000542207 RNF10-028 120554771-120563373 protein_coding
  ENST00000542438 RNF10-024 120534356-120562982 protein_coding
  ENST00000542701 RNF10-011 120570203-120577247 processed_transcript
  ENST00000543578 RNF10-027 120546457-120557404 processed_transcript
  ENST00000543675 RNF10-021 120557544-120563490 processed_transcript
  ENST00000543757 RNF10-008 120566953-120575950 processed_transcript
  ENST00000544124 RNF10-017 120563272-120563905 retained_intron
  ENST00000544805 RNF10-012 120575601-120576878 retained_intron
  ENST00000545419 RNF10-009 120563485-120576888 nonsense_mediated_decay
  ENST00000546262 RNF10-018 120560844-120566894 protein_coding
  ENST00000551139 RNF10-030 120534854-120554000 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325954ENST00000413266ENST00000542207ENST00000546262
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325954 16.867±0.00 19.232±0.00 4.668±0.00 8.475±5.26 10.572±6.60 10.870±6.02 11.968±8.77 10.661±6.80 6.419±1.57 13.796±9.87 17.203±6.52 11.810±4.97 16.255±0.63 23.297±0.00
ENST00000413266 34.518±0.00 19.725±0.00 N/A 20.698±0.00 13.404±11.27 24.523±0.00 31.234±29.87 43.099±0.00 17.583±0.00 54.173±0.00 66.391±0.00 24.558±10.86 21.076±2.76 64.926±14.67
ENST00000542207 N/A N/A 21.003±0.00 N/A 19.632±0.00 21.073±0.00 10.326±0.00 19.364±0.00 23.065±0.00 13.729±0.00 N/A 12.921±0.00 N/A N/A
ENST00000546262 N/A N/A N/A 59.930±0.00 49.063±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 94.187±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694
CIL_0007ZA CIL_0007ZA_0001 VISTA 12:120240385-120840841
CIL_00075W CIL_00075W_0002 CGP 12:120533480-120581398

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0010626 ISS negative regulation of Schwann cell proliferation
GO:0031643 ISS positive regulation of myelination
GO:0044212 ISS transcription regulatory region DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0051865 IDA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079687 rnf10 ring finger protein 10 protein_coding Danio_rerio
ENSMUSG00000041740 Rnf10 ring finger protein 10 protein_coding Mus_musculus

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