C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cold shock domain containing C2, RNA binding
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042109 Csdc2 10090 + 15:81936759-81950941 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038757 Csdc2-001 81936759-81950941 protein_coding
  ENSMUST00000135663 Csdc2-003 81936982-81946869 protein_coding
  ENSMUST00000140209 Csdc2-004 81945731-81946887 processed_transcript
  ENSMUST00000152678 Csdc2-002 81946961-81950934 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038757ENSMUST00000140209ENSMUST00000152678
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038757 6.914±5.55 16.127±4.14 11.132±1.21 33.660±18.80 2.057±0.40 4.295±0.54 29.050±0.74 1.961±0.25 0.363±0.18 3.378±0.14 0.452±0.08 17.814±7.02 0.618±0.42 2.986±1.19
ENSMUST00000140209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.00 N/A
ENSMUST00000152678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.036±0.00 0.687±0.11 0.042±0.02 0.193±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000V8 CIL_0000V8_0003 CGP 15:81915030-81950941
CIL_00023C CIL_00023C_0002 CGP 15:81936759-81960930

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041323 csdc2a cold shock domain containing C2, RNA binding a protein_coding Danio_rerio
ENSDARG00000068477 csdc2b cold shock domain containing C2, RNA binding b protein_coding Danio_rerio
ENSG00000172346 CSDC2 cold shock domain containing C2, RNA binding protein_coding Homo_sapiens

Loading