C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000V8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000038399-ENSDARG00000068477 CGP 7955 3:5689082-5711244
GeneTranscriptPositionBiotype
ENSDARG00000038399 (polr3h)
polymerase (RNA) III (DNA directed) polypeptide H 		ENSDART00000056037 (polr3h-001) 5689082-5699669 protein_coding
ENSDART00000157160 (polr3h-002) 5696739-5699579 retained_intron
ENSDARG00000068477 (csdc2b)
cold shock domain containing C2, RNA binding b 		ENSDART00000099055 (csdc2b-201) 5706665-5711244 protein_coding
CIL_0000V8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100413-ENSG00000172346 CGP 9606 22:41525804-41577741
GeneTranscriptPositionBiotype
ENSG00000100412 (ACO2)
aconitase 2, mitochondrial 		ENST00000216254 (ACO2-001) 41469125-41528989 protein_coding
ENST00000396512 (ACO2-002) 41469130-41528989 protein_coding
ENST00000466237 (ACO2-007) 41515766-41521590 processed_transcript
ENST00000471094 (ACO2-003) 41469160-41511966 processed_transcript
ENST00000478010 (ACO2-005) 41508015-41516123 retained_intron
ENST00000481310 (ACO2-006) 41515513-41517452 processed_transcript
ENST00000482208 (ACO2-004) 41507838-41512287 retained_intron
ENSG00000100413 (POLR3H)
polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) 		ENST00000337566 (POLR3H-007) 41528842-41544462 protein_coding
ENST00000355209 (POLR3H-001) 41525826-41544445 protein_coding
ENST00000396504 (POLR3H-201) 41525804-41544489 protein_coding
ENST00000407461 (POLR3H-005) 41529212-41544606 protein_coding
ENST00000420561 (POLR3H-009) 41532625-41544386 processed_transcript
ENST00000431534 (POLR3H-004) 41528843-41544455 nonsense_mediated_decay
ENST00000432789 (POLR3H-006) 41528865-41544427 nonsense_mediated_decay
ENST00000442616 (POLR3H-008) 41532119-41544460 nonsense_mediated_decay
ENST00000483837 (POLR3H-002) 41539143-41544472 retained_intron
ENSG00000100417 (PMM1)
phosphomannomutase 1 		ENST00000216259 (PMM1-001) 41576894-41589890 protein_coding
ENST00000414636 (PMM1-006) 41584020-41589847 nonsense_mediated_decay
ENST00000463617 (PMM1-005) 41576903-41580689 retained_intron
ENST00000466645 (PMM1-009) 41583983-41589796 processed_transcript
ENST00000472620 (PMM1-002) 41576931-41589871 retained_intron
ENST00000478337 (PMM1-008) 41584006-41589825 retained_intron
ENST00000482178 (PMM1-004) 41576903-41585402 retained_intron
ENST00000485648 (PMM1-003) 41576937-41589818 retained_intron
ENST00000493389 (PMM1-007) 41586106-41589829 retained_intron
ENSG00000172346 (CSDC2)
cold shock domain containing C2, RNA binding 		ENST00000306149 (CSDC2-001) 41560763-41576666 protein_coding
ENST00000460790 (CSDC2-003) 41572017-41577741 protein_coding
CIL_0000V8_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022476-ENSMUSG00000042109 CGP 10090 15:81915030-81950941
GeneTranscriptPositionBiotype
ENSMUSG00000022476 (Polr3h)
polymerase (RNA) III (DNA directed) polypeptide H 		ENSMUST00000023113 (Polr3h-201) 81915030-81926213 protein_coding
ENSMUSG00000022477 (Aco2)
aconitase 2, mitochondrial 		ENSMUST00000023116 (Aco2-001) 81872309-81915133 protein_coding
ENSMUST00000126352 (Aco2-004) 81907079-81910509 retained_intron
ENSMUST00000135198 (Aco2-003) 81872484-81889688 retained_intron
ENSMUST00000144324 (Aco2-006) 81910289-81913293 retained_intron
ENSMUST00000155704 (Aco2-005) 81907359-81910163 retained_intron
ENSMUST00000157003 (Aco2-002) 81872484-81889689 processed_transcript
ENSMUSG00000042109 (Csdc2)
cold shock domain containing C2, RNA binding 		ENSMUST00000038757 (Csdc2-001) 81936759-81950941 protein_coding
ENSMUST00000135663 (Csdc2-003) 81936982-81946869 protein_coding
ENSMUST00000140209 (Csdc2-004) 81945731-81946887 processed_transcript
ENSMUST00000152678 (Csdc2-002) 81946961-81950934 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000V8_0001ENSDARG00000038399ENSDART00000056037ENSDART00000157160ENSDARG00000068477ENSDART00000099055CIL_0000V8_0002ENSG00000100412ENST00000216254ENST00000396512ENST00000466237ENST00000471094ENST00000478010ENST00000481310ENST00000482208ENSG00000100413ENST00000337566ENST00000355209ENST00000396504ENST00000407461ENST00000420561ENST00000431534ENST00000432789ENST00000442616ENST00000483837ENSG00000100417ENST00000216259ENST00000414636ENST00000463617ENST00000466645ENST00000472620ENST00000478337ENST00000482178ENST00000485648ENST00000493389ENSG00000172346ENST00000306149ENST00000460790CIL_0000V8_0003ENSMUSG00000022476ENSMUST00000023113ENSMUSG00000022477ENSMUST00000023116ENSMUST00000126352ENSMUST00000135198ENSMUST00000144324ENSMUST00000155704ENSMUST00000157003ENSMUSG00000042109ENSMUST00000038757ENSMUST00000135663ENSMUST00000140209ENSMUST00000152678
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000V8_0001ENSDARG00000038399ENSDART00000056037ENSDARG00000068477ENSDART00000099055CIL_0000V8_0002ENSG00000100412ENST00000216254ENSG00000100413ENST00000337566ENST00000355209ENST00000396504ENSG00000100417ENST00000216259ENST00000463617ENST00000482178ENST00000485648ENST00000493389ENSG00000172346ENST00000306149CIL_0000V8_0003ENSMUSG00000022476ENSMUST00000023113ENSMUSG00000022477ENSMUST00000023116ENSMUST00000144324ENSMUST00000155704ENSMUSG00000042109ENSMUST00000038757ENSMUST00000140209ENSMUST00000152678
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000038399 ENSDART00000056037 N/A N/A N/A 7.052±3.54 N/A N/A 7.634±1.36 9.166±3.14 10.214±0.00 N/A 9.251±0.00 N/A N/A N/A
ENSDART00000157160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000068477 ENSDART00000099055 N/A N/A N/A 20.038±3.50 N/A N/A 0.728±0.07 N/A 15.093±0.00 N/A 4.018±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100412 ENST00000216254 26.608±0.00 20.580±0.00 16.185±0.00 41.199±17.94 25.413±19.28 16.744±2.64 98.823±68.79 29.729±22.33 11.447±3.82 11.516±7.08 93.444±38.10 17.980±10.38 33.254±3.01 23.285±0.58
ENST00000396512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100413 ENST00000337566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.888±0.00
ENST00000355209 15.388±0.00 20.214±0.00 N/A 25.440±0.00 18.018±0.00 7.561±0.00 N/A 16.129±0.00 15.128±0.00 N/A N/A 13.793±6.02 12.878±0.24 14.301±0.00
ENST00000396504 N/A N/A N/A 8.044±0.00 N/A 4.084±0.00 32.662±27.87 8.045±6.02 3.173±1.75 N/A N/A 8.451±5.03 12.370±0.00 8.608±0.00
ENST00000407461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100417 ENST00000216259 36.014±0.00 8.497±0.00 3.288±0.00 18.182±10.32 13.294±12.50 14.029±11.82 1.042±0.00 25.164±18.08 13.222±10.46 9.008±7.12 8.566±0.00 25.994±14.70 18.980±4.92 39.320±9.31
ENST00000414636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463617 N/A N/A N/A N/A N/A 0.566±0.00 N/A N/A N/A N/A N/A 0.911±0.00 N/A N/A
ENST00000466645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482178 N/A N/A N/A N/A N/A 0.625±0.00 N/A N/A N/A 0.424±0.00 N/A N/A N/A N/A
ENST00000485648 N/A 2.117±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493389 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.967±0.00 N/A N/A N/A N/A
ENSG00000172346 ENST00000306149 N/A 2.025±0.00 1.366±0.00 3.141±2.25 N/A 2.954±0.00 27.707±25.95 12.436±0.00 0.207±0.00 5.174±4.73 0.540±0.33 53.804±38.45 2.187±0.00 13.184±0.75
ENST00000460790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022476 ENSMUST00000023113 N/A N/A N/A N/A N/A N/A N/A N/A 12.176±0.91 N/A N/A N/A 9.380±0.00 N/A
ENSMUSG00000022477 ENSMUST00000023116 220.371±68.92 220.338±29.26 87.275±1.99 146.783±62.14 298.217±123.40 178.332±20.34 775.883±41.02 399.948±10.73 68.232±14.04 94.159±15.08 497.271±15.04 119.198±10.17 81.568±17.52 55.267±4.54
ENSMUST00000126352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144324 N/A N/A N/A 250.848±0.00 N/A N/A N/A N/A N/A N/A N/A 125.069±0.00 74.868±15.68 N/A
ENSMUST00000155704 N/A N/A N/A 280.289±0.00 N/A N/A N/A N/A N/A N/A N/A 164.398±0.00 109.846±34.17 152.632±0.00
ENSMUST00000157003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000042109 ENSMUST00000038757 6.914±5.55 16.127±4.14 11.132±1.21 33.660±18.80 2.057±0.40 4.295±0.54 29.050±0.74 1.961±0.25 0.363±0.18 3.378±0.14 0.452±0.08 17.814±7.02 0.618±0.42 2.986±1.19
ENSMUST00000135663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.00 N/A
ENSMUST00000152678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.036±0.00 0.687±0.11 0.042±0.02 0.193±0.00

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