C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cold shock domain containing C2, RNA binding
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038757 Csdc2-001 ENSMUSG00000042109 10090 + 15:81936759-81950941 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038757
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038757 6.914±5.55 16.127±4.14 11.132±1.21 33.660±18.80 2.057±0.40 4.295±0.54 29.050±0.74 1.961±0.25 0.363±0.18 3.378±0.14 0.452±0.08 17.814±7.02 0.618±0.42 2.986±1.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000V8 CIL_0000V8_0003 CGP 15:81915030-81950941
CIL_00023C CIL_00023C_0002 CGP 15:81936759-81960930

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306149 CSDC2-001 protein_coding Homo_sapiens 0 782
ENST00000460790 CSDC2-003 protein_coding Homo_sapiens 0 294

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