C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: H1 histone family, member O, oocyte-specific
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042279 H1foo 10090 + 6:115944938-115950236 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037831 H1foo-001 115944938-115950231 protein_coding
  ENSMUST00000161617 H1foo-004 115944938-115950231 protein_coding
  ENSMUST00000161969 H1foo-002 115944938-115950236 protein_coding
  ENSMUST00000162084 H1foo-003 115944938-115950231 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonLiverOvaryPlacentaTestisENSMUST00000037831ENSMUST00000161617ENSMUST00000161969ENSMUST00000162084
Transcript ID Adrenal Bladder Brain Colon Liver Ovary Placenta Testis
ENSMUST00000037831 0.018±0.00 N/A 0.016±0.00 0.007±0.00 0.006±0.00 15.295±5.66 0.009±0.01 0.019±0.01
ENSMUST00000161617 N/A N/A 0.041±0.00 0.013±0.00 0.011±0.00 10.023±9.27 0.022±0.02 0.012±0.00
ENSMUST00000161969 0.046±0.00 0.007±0.00 0.007±0.00 0.041±0.00 N/A 6.547±2.68 N/A 0.028±0.03
ENSMUST00000162084 N/A N/A N/A N/A N/A N/A N/A 0.148±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030W CIL_00030W_0002 CGP 6:115931927-115950236
CIL_000314 CIL_000314_0002 CGP 6:115944938-115995005

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0001674 IDA female germ cell nucleus
GO:0003677 ISA DNA binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006334 ISA nucleosome assembly
GO:0016584 IDA nucleosome positioning
GO:0031492 IDA nucleosomal DNA binding
GO:0044030 IDA regulation of DNA methylation
GO:0051321 IEA meiotic cell cycle
GO:0070062 IEA extracellular vesicular exosome
GO:2000737 IMP negative regulation of stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040344 h1m linker histone H1M protein_coding Danio_rerio
ENSG00000178804 H1FOO H1 histone family, member O, oocyte-specific protein_coding Homo_sapiens

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