C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00030W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163914-ENSG00000178804 CGP 9606 3:129528640-129551467
GeneTranscriptPositionBiotype
ENSG00000163914 (RHO)
rhodopsin
ENST00000296271 (RHO-001) 129528640-129535169 protein_coding
ENSG00000178804 (H1FOO)
H1 histone family, member O, oocyte-specific
ENST00000324382 (H1FOO-001) 129543214-129551361 protein_coding
ENST00000503977 (H1FOO-002) 129548386-129551467 protein_coding
CIL_00030W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030324-ENSMUSG00000042279 CGP 10090 6:115931927-115950236
GeneTranscriptPositionBiotype
ENSMUSG00000030324 (Rho)
rhodopsin
ENSMUST00000032471 (Rho-201) 115931927-115938829 protein_coding
ENSMUSG00000042279 (H1foo)
H1 histone family, member O, oocyte-specific
ENSMUST00000037831 (H1foo-001) 115944938-115950231 protein_coding
ENSMUST00000161617 (H1foo-004) 115944938-115950231 protein_coding
ENSMUST00000161969 (H1foo-002) 115944938-115950236 protein_coding
ENSMUST00000162084 (H1foo-003) 115944938-115950231 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00030W_0001ENSG00000163914ENST00000296271ENSG00000178804ENST00000324382ENST00000503977CIL_00030W_0002ENSMUSG00000030324ENSMUST00000032471ENSMUSG00000042279ENSMUST00000037831ENSMUST00000161617ENSMUST00000161969ENSMUST00000162084
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00030W_0001ENSG00000163914ENST00000296271ENSG00000178804ENST00000324382ENST00000503977CIL_00030W_0002ENSMUSG00000030324ENSMUST00000032471ENSMUSG00000042279ENSMUST00000037831ENSMUST00000161617ENSMUST00000161969ENSMUST00000162084
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163914 ENST00000296271 N/A N/A N/A 0.209±0.01 0.103±0.00 N/A 0.088±0.00 N/A N/A N/A N/A 0.014±0.00 0.030±0.01 0.021±0.00
ENSG00000178804 ENST00000324382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A
ENST00000503977 N/A N/A N/A 0.033±0.00 N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A 1.971±1.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030324 ENSMUST00000032471 0.167±0.14 0.427±0.08 0.041±0.00 0.207±0.10 0.145±0.05 0.053±0.02 0.085±0.06 0.132±0.07 0.017±0.01 0.212±0.07 0.050±0.02 0.551±0.26 0.120±0.05 0.702±0.31
ENSMUSG00000042279 ENSMUST00000037831 N/A 0.018±0.00 N/A 0.016±0.00 N/A 0.007±0.00 N/A N/A 0.006±0.00 N/A N/A 15.295±5.66 0.009±0.01 0.019±0.01
ENSMUST00000161617 N/A N/A N/A 0.041±0.00 N/A 0.013±0.00 N/A N/A 0.011±0.00 N/A N/A 10.023±9.27 0.022±0.02 0.012±0.00
ENSMUST00000161969 N/A 0.046±0.00 0.007±0.00 0.007±0.00 N/A 0.041±0.00 N/A N/A N/A N/A N/A 6.547±2.68 N/A 0.028±0.03
ENSMUST00000162084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.148±0.00

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