C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000314_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000178804-ENSG00000004399 CGP 9606 3:129543214-129606818
GeneTranscriptPositionBiotype
ENSG00000004399 (PLXND1)
plexin D1 		ENST00000324093 (PLXND1-001) 129555175-129606818 protein_coding
ENST00000501038 (PLXND1-003) 129555214-129557034 retained_intron
ENST00000503166 (PLXND1-013) 129563094-129566166 retained_intron
ENST00000504524 (PLXND1-002) 129555214-129558697 retained_intron
ENST00000504689 (PLXND1-018) 129555214-129557223 protein_coding
ENST00000504767 (PLXND1-011) 129570684-129571723 retained_intron
ENST00000504979 (PLXND1-015) 129562473-129563213 retained_intron
ENST00000505237 (PLXND1-006) 129585952-129589527 protein_coding
ENST00000505505 (PLXND1-008) 129574336-129578548 retained_intron
ENST00000505665 (PLXND1-007) 129583631-129586685 nonsense_mediated_decay
ENST00000506979 (PLXND1-014) 129556617-129561056 protein_coding
ENST00000508630 (PLXND1-016) 129558536-129560942 retained_intron
ENST00000511018 (PLXND1-010) 129570872-129571858 retained_intron
ENST00000512744 (PLXND1-005) 129555218-129565991 nonsense_mediated_decay
ENST00000512807 (PLXND1-017) 129559165-129560414 retained_intron
ENST00000514990 (PLXND1-012) 129569189-129571204 retained_intron
ENST00000515191 (PLXND1-009) 129571540-129572982 retained_intron
ENSG00000178804 (H1FOO)
H1 histone family, member O, oocyte-specific 		ENST00000324382 (H1FOO-001) 129543214-129551361 protein_coding
ENST00000503977 (H1FOO-002) 129548386-129551467 protein_coding
ENSG00000239437 (RN7SL752P)
RNA, 7SL, cytoplasmic 752, pseudogene 		ENST00000463779 (RN7SL752P-201) 129591349-129591635 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_000314_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042279-ENSMUSG00000030123 CGP 10090 6:115944938-115995005
GeneTranscriptPositionBiotype
ENSMUSG00000030123 (Plxnd1)
plexin D1 		ENSMUST00000015511 (Plxnd1-001) 115954811-115995005 protein_coding
ENSMUST00000123165 (Plxnd1-003) 115955800-115956364 processed_transcript
ENSMUST00000131590 (Plxnd1-002) 115966963-115969426 protein_coding
ENSMUSG00000042279 (H1foo)
H1 histone family, member O, oocyte-specific 		ENSMUST00000037831 (H1foo-001) 115944938-115950231 protein_coding
ENSMUST00000161617 (H1foo-004) 115944938-115950231 protein_coding
ENSMUST00000161969 (H1foo-002) 115944938-115950236 protein_coding
ENSMUST00000162084 (H1foo-003) 115944938-115950231 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000314_0001ENSG00000004399ENST00000324093ENST00000501038ENST00000503166ENST00000504524ENST00000504689ENST00000504767ENST00000504979ENST00000505237ENST00000505505ENST00000505665ENST00000506979ENST00000508630ENST00000511018ENST00000512744ENST00000512807ENST00000514990ENST00000515191ENSG00000178804ENST00000324382ENST00000503977ENSG00000239437ENST00000463779CIL_000314_0002ENSMUSG00000030123ENSMUST00000015511ENSMUST00000123165ENSMUST00000131590ENSMUSG00000042279ENSMUST00000037831ENSMUST00000161617ENSMUST00000161969ENSMUST00000162084
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000314_0001ENSG00000004399ENST00000324093ENST00000504524ENST00000506979ENST00000508630ENST00000512744ENST00000514990ENSG00000178804ENST00000324382ENST00000503977ENSG00000239437ENST00000463779CIL_000314_0002ENSMUSG00000030123ENSMUST00000015511ENSMUSG00000042279ENSMUST00000037831ENSMUST00000161617ENSMUST00000161969ENSMUST00000162084
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000004399 ENST00000324093 29.703±0.00 22.226±0.00 0.725±0.00 3.187±2.25 17.556±14.47 3.779±2.69 4.618±3.47 5.287±2.60 3.138±1.60 10.881±7.53 N/A 6.107±4.65 44.572±11.63 5.810±2.41
ENST00000501038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.858±0.00 12.657±1.36 54.648±0.00 8.327±0.00
ENST00000504689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506979 N/A N/A N/A 6.345±0.00 10.732±0.00 5.446±0.00 2.744±0.00 10.376±0.00 6.928±0.00 12.044±0.00 3.777±0.00 7.412±0.00 N/A N/A
ENST00000508630 N/A N/A 6.253±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512744 N/A N/A N/A N/A 1.560±0.00 N/A N/A 6.170±0.00 4.775±0.00 10.217±0.00 1.027±0.00 7.149±0.00 N/A N/A
ENST00000512807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514990 N/A N/A N/A N/A 4.320±0.00 1.156±0.00 1.807±0.00 N/A N/A 5.303±0.00 N/A N/A N/A N/A
ENST00000515191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000178804 ENST00000324382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A
ENST00000503977 N/A N/A N/A 0.033±0.00 N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A 1.971±1.04
ENSG00000239437 ENST00000463779 0.139±0.00 0.292±0.00 N/A 1.057±0.65 0.077±0.00 1.598±1.46 0.928±0.78 1.368±0.76 4.926±0.00 0.596±0.00 0.762±0.00 0.269±0.05 N/A 0.195±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030123 ENSMUST00000015511 54.326±6.33 88.186±8.29 8.948±0.04 13.441±5.54 44.082±18.36 15.032±0.85 25.406±3.75 20.637±1.87 5.248±0.93 64.306±8.56 7.074±0.68 62.116±22.05 18.763±10.34 1.736±0.62
ENSMUST00000123165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000042279 ENSMUST00000037831 N/A 0.018±0.00 N/A 0.016±0.00 N/A 0.007±0.00 N/A N/A 0.006±0.00 N/A N/A 15.295±5.66 0.009±0.01 0.019±0.01
ENSMUST00000161617 N/A N/A N/A 0.041±0.00 N/A 0.013±0.00 N/A N/A 0.011±0.00 N/A N/A 10.023±9.27 0.022±0.02 0.012±0.00
ENSMUST00000161969 N/A 0.046±0.00 0.007±0.00 0.007±0.00 N/A 0.041±0.00 N/A N/A N/A N/A N/A 6.547±2.68 N/A 0.028±0.03
ENSMUST00000162084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.148±0.00

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