C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small G protein signaling modulator 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042303 Sgsm3 10090 + 15:80977765-81012289 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042506 Sgsm3-201 80977765-81012289 protein_coding
  ENSMUST00000124845 Sgsm3-002 80977799-81012289 processed_transcript
  ENSMUST00000132039 Sgsm3-012 81010725-81011741 retained_intron
  ENSMUST00000134511 Sgsm3-011 81010635-81011756 retained_intron
  ENSMUST00000134559 Sgsm3-009 81009250-81010299 retained_intron
  ENSMUST00000137004 Sgsm3-003 80977837-81004185 processed_transcript
  ENSMUST00000137255 Sgsm3-006 80977820-81006497 protein_coding
  ENSMUST00000138550 Sgsm3-007 81007938-81009950 retained_intron
  ENSMUST00000139517 Sgsm3-001 80977765-81012289 protein_coding
  ENSMUST00000143147 Sgsm3-005 80977779-81006515 nonsense_mediated_decay
  ENSMUST00000149345 Sgsm3-010 81009858-81011889 retained_intron
  ENSMUST00000154904 Sgsm3-008 81008359-81010536 protein_coding
  ENSMUST00000156064 Sgsm3-004 80977820-81004185 processed_transcript
  ENSMUST00000156783 Sgsm3-013 81010877-81011635 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042506ENSMUST00000124845ENSMUST00000139517ENSMUST00000154904
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042506 7.700±1.18 7.829±0.89 15.753±0.60 17.357±2.43 8.518±0.78 50.083±9.09 2.838±0.29 6.144±1.05 3.602±1.23 14.401±1.83 5.059±0.47 8.114±3.37 5.638±2.28 12.782±0.57
ENSMUST00000124845 N/A N/A N/A N/A N/A N/A N/A 2.463±0.00 1.402±0.06 N/A N/A 3.522±1.63 2.684±0.00 N/A
ENSMUST00000139517 N/A N/A N/A N/A N/A 53.893±2.09 N/A N/A N/A 17.752±0.00 N/A N/A N/A 9.723±0.85
ENSMUST00000154904 N/A N/A N/A 64.012±0.00 N/A N/A N/A N/A N/A N/A N/A 23.256±0.00 24.083±0.00 35.942±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005W1 CIL_0005W1_0002 CGP 15:80977765-81190757

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005083 NAS small GTPase regulator activity
GO:0005097 ISO Rab GTPase activator activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005921 IDA gap junction
GO:0007050 IEA cell cycle arrest
GO:0017137 ISS Rab GTPase binding
GO:0032483 ISS regulation of Rab protein signal transduction
GO:0032486 ISS Rap protein signal transduction
GO:0032851 IEA:ISO positive regulation of Rab GTPase activity
GO:0045732 IDA positive regulation of protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019038 sgsm3 small G protein signaling modulator 3 protein_coding Danio_rerio
ENSG00000100359 SGSM3 small G protein signaling modulator 3 protein_coding Homo_sapiens

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