C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small G protein signaling modulator 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042506 Sgsm3-201 ENSMUSG00000042303 10090 + 15:80977765-81012289 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042506
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042506 7.700±1.18 7.829±0.89 15.753±0.60 17.357±2.43 8.518±0.78 50.083±9.09 2.838±0.29 6.144±1.05 3.602±1.23 14.401±1.83 5.059±0.47 8.114±3.37 5.638±2.28 12.782±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005W1 CIL_0005W1_0002 CGP 15:80977765-81190757

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005083 NAS small GTPase regulator activity
GO:0005097 ISO Rab GTPase activator activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005921 IDA gap junction
GO:0007050 IEA cell cycle arrest
GO:0017137 ISS Rab GTPase binding
GO:0032483 ISS regulation of Rab protein signal transduction
GO:0032486 ISS Rap protein signal transduction
GO:0032851 IEA:ISO positive regulation of Rab GTPase activity
GO:0045732 IDA positive regulation of protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000020342 sgsm3-001 protein_coding Danio_rerio 0 497
ENST00000248929 SGSM3-001 protein_coding Homo_sapiens 0 2710
ENST00000417424 SGSM3-012 protein_coding Homo_sapiens 0 224
ENST00000427834 SGSM3-013 protein_coding Homo_sapiens 0 673
ENST00000457767 SGSM3-004 protein_coding Homo_sapiens 0 1072
ENST00000462457 SGSM3-011 retained_intron Homo_sapiens 0 287
ENST00000467915 SGSM3-008 retained_intron Homo_sapiens 0 222
ENST00000469719 SGSM3-010 retained_intron Homo_sapiens 0 357
ENST00000470518 SGSM3-009 retained_intron Homo_sapiens 0 776
ENST00000478085 SGSM3-003 retained_intron Homo_sapiens 0 1262
ENST00000480830 SGSM3-005 retained_intron Homo_sapiens 0 568
ENST00000481028 SGSM3-007 retained_intron Homo_sapiens 0 309
ENST00000481408 SGSM3-006 retained_intron Homo_sapiens 0 671
ENST00000485962 SGSM3-002 retained_intron Homo_sapiens 0 1450

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