C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin associated and SH3 domain containing, A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042345 Ubash3a 10090 + 17:31207873-31242202 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048656 Ubash3a-001 31207873-31242202 protein_coding
  ENSMUST00000144772 Ubash3a-003 31208080-31216231 nonsense_mediated_decay
  ENSMUST00000147686 Ubash3a-004 31212297-31217982 processed_transcript
  ENSMUST00000151620 Ubash3a-002 31212113-31242202 processed_transcript
  ENSMUST00000173776 Ubash3a-005 31208089-31213897 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048656ENSMUST00000144772ENSMUST00000147686ENSMUST00000151620ENSMUST00000173776
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048656 0.089±0.01 N/A 0.081±0.01 N/A 2.617±1.27 0.157±0.07 N/A 0.261±0.02 2.839±2.92 0.156±0.01 N/A 0.454±0.20 0.021±0.01 0.146±0.05
ENSMUST00000144772 0.228±0.00 N/A N/A N/A N/A 0.207±0.00 N/A N/A N/A 0.202±0.02 N/A N/A 0.407±0.00 N/A
ENSMUST00000147686 0.160±0.05 N/A N/A N/A 3.427±0.00 N/A N/A N/A 0.249±0.00 N/A N/A 1.138±0.00 N/A N/A
ENSMUST00000151620 0.093±0.02 0.078±0.02 N/A 0.040±0.04 N/A N/A 0.082±0.02 0.060±0.02 0.028±0.00 0.095±0.00 0.165±0.00 0.354±0.24 0.075±0.05 N/A
ENSMUST00000173776 N/A 0.396±0.00 N/A N/A N/A 0.203±0.00 N/A N/A N/A N/A N/A 0.438±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QJ CIL_0008QJ_0002 VISTA 17:31053737-31653776
CIL_00036C CIL_00036C_0002 CGP 17:31179272-31242202
CIL_00036D CIL_00036D_0002 CGP 17:31207873-31277356

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001817 IGI regulation of cytokine production
GO:0003824 IEA catalytic activity
GO:0005634 IEA nucleus
GO:0005829 IEA cytosol
GO:0008152 IEA metabolic process
GO:0050860 IGI negative regulation of T cell receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000160185 UBASH3A ubiquitin associated and SH3 domain containing A protein_coding Homo_sapiens

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