C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00036C_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000160183-ENSG00000160185 CGP 9606 21:42371890-42447681
GeneTranscriptPositionBiotype
ENSG00000160183 (TMPRSS3)
transmembrane protease, serine 3 		ENST00000291532 (TMPRSS3-001) 42371890-42396846 protein_coding
ENST00000398397 (TMPRSS3-003) 42381876-42396091 protein_coding
ENST00000398405 (TMPRSS3-004) 42371890-42395943 protein_coding
ENST00000433957 (TMPRSS3-002) 42371890-42396059 protein_coding
ENST00000474596 (TMPRSS3-006) 42371890-42389118 processed_transcript
ENST00000476848 (TMPRSS3-007) 42371890-42383751 retained_intron
ENST00000478680 (TMPRSS3-008) 42381878-42382753 processed_transcript
ENST00000482761 (TMPRSS3-005) 42371890-42390418 retained_intron
ENSG00000160185 (UBASH3A)
ubiquitin associated and SH3 domain containing A 		ENST00000291535 (UBASH3A-002) 42403899-42447243 protein_coding
ENST00000319294 (UBASH3A-001) 42403915-42447681 protein_coding
ENST00000398367 (UBASH3A-003) 42403917-42447243 protein_coding
ENST00000473381 (UBASH3A-004) 42403917-42447530 retained_intron
ENSG00000252619 (RNU6-1149P)
RNA, U6 small nuclear 1149, pseudogene 		ENST00000516810 (RNU6-1149P-201) 42417497-42417593 snRNA
CIL_00036C_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024034-ENSMUSG00000042345 CGP 10090 17:31179272-31242202
GeneTranscriptPositionBiotype
ENSMUSG00000024034 (Tmprss3)
transmembrane protease, serine 3 		ENSMUST00000024833 (Tmprss3-002) 31179272-31197749 protein_coding
ENSMUST00000114549 (Tmprss3-001) 31179272-31198975 protein_coding
ENSMUSG00000042345 (Ubash3a)
ubiquitin associated and SH3 domain containing, A 		ENSMUST00000048656 (Ubash3a-001) 31207873-31242202 protein_coding
ENSMUST00000144772 (Ubash3a-003) 31208080-31216231 nonsense_mediated_decay
ENSMUST00000147686 (Ubash3a-004) 31212297-31217982 processed_transcript
ENSMUST00000151620 (Ubash3a-002) 31212113-31242202 processed_transcript
ENSMUST00000173776 (Ubash3a-005) 31208089-31213897 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00036C_0001ENSG00000160183ENST00000291532ENST00000398397ENST00000398405ENST00000433957ENST00000474596ENST00000476848ENST00000478680ENST00000482761ENSG00000160185ENST00000291535ENST00000319294ENST00000398367ENST00000473381ENSG00000252619ENST00000516810CIL_00036C_0002ENSMUSG00000024034ENSMUST00000024833ENSMUST00000114549ENSMUSG00000042345ENSMUST00000048656ENSMUST00000144772ENSMUST00000147686ENSMUST00000151620ENSMUST00000173776
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00036C_0001ENSG00000160183ENST00000291532ENST00000398397ENST00000398405ENST00000433957ENST00000474596ENST00000476848ENST00000478680ENSG00000160185ENST00000291535ENST00000319294ENST00000398367ENST00000473381ENSG00000252619ENST00000516810CIL_00036C_0002ENSMUSG00000024034ENSMUST00000024833ENSMUST00000114549ENSMUSG00000042345ENSMUST00000048656ENSMUST00000144772ENSMUST00000147686ENSMUST00000151620ENSMUST00000173776
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000160183 ENST00000291532 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000398397 N/A N/A 0.180±0.00 0.426±0.00 N/A N/A N/A N/A N/A 0.753±0.00 N/A 1.228±0.00 N/A N/A
ENST00000398405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.061±0.00 0.047±0.00
ENST00000433957 N/A N/A N/A 0.072±0.00 0.547±0.00 0.020±0.00 N/A 0.161±0.00 0.104±0.00 N/A N/A 6.403±4.51 0.256±0.14 0.248±0.00
ENST00000474596 0.195±0.00 0.143±0.00 0.249±0.00 0.504±0.00 N/A 0.079±0.00 0.011±0.00 0.247±0.00 N/A N/A 0.039±0.00 5.014±3.56 0.135±0.09 N/A
ENST00000476848 N/A N/A N/A N/A 0.239±0.00 N/A N/A N/A 0.077±0.00 N/A N/A 4.266±0.00 N/A N/A
ENST00000478680 N/A N/A N/A N/A 2.025±0.00 N/A N/A N/A N/A 1.156±0.00 N/A N/A N/A N/A
ENST00000482761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000160185 ENST00000291535 N/A N/A N/A N/A N/A 0.561±0.00 N/A N/A N/A 0.496±0.20 N/A N/A 0.057±0.00 N/A
ENST00000319294 N/A 2.469±0.00 N/A N/A N/A 0.025±0.00 N/A 0.042±0.00 0.038±0.00 N/A N/A 0.205±0.08 0.287±0.00 N/A
ENST00000398367 N/A N/A 0.061±0.00 0.058±0.00 0.060±0.00 N/A 0.031±0.02 N/A 0.042±0.00 N/A N/A 0.027±0.00 0.111±0.00 N/A
ENST00000473381 N/A 0.643±0.00 N/A N/A 0.065±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.195±0.00
ENSG00000252619 ENST00000516810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.381±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024034 ENSMUST00000024833 N/A N/A 0.012±0.00 0.010±0.01 0.059±0.02 0.031±0.01 N/A 0.019±0.01 0.300±0.16 0.048±0.01 N/A 0.045±0.02 0.125±0.10 0.035±0.03
ENSMUST00000114549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A
ENSMUSG00000042345 ENSMUST00000048656 0.089±0.01 N/A 0.081±0.01 N/A 2.617±1.27 0.157±0.07 N/A 0.261±0.02 2.839±2.92 0.156±0.01 N/A 0.454±0.20 0.021±0.01 0.146±0.05
ENSMUST00000144772 0.228±0.00 N/A N/A N/A N/A 0.207±0.00 N/A N/A N/A 0.202±0.02 N/A N/A 0.407±0.00 N/A
ENSMUST00000147686 0.160±0.05 N/A N/A N/A 3.427±0.00 N/A N/A N/A 0.249±0.00 N/A N/A 1.138±0.00 N/A N/A
ENSMUST00000151620 0.093±0.02 0.078±0.02 N/A 0.040±0.04 N/A N/A 0.082±0.02 0.060±0.02 0.028±0.00 0.095±0.00 0.165±0.00 0.354±0.24 0.075±0.05 N/A
ENSMUST00000173776 N/A 0.396±0.00 N/A N/A N/A 0.203±0.00 N/A N/A N/A N/A N/A 0.438±0.00 N/A N/A

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