C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sad1 and UNC84 domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042524 Sun2 10090 - 15:79724070-79742536 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000046259 Sun2-002 79724073-79742536 protein_coding
  ENSMUST00000089311 Sun2-001 79724070-79742534 protein_coding
  ENSMUST00000100439 Sun2-003 79724071-79742504 protein_coding
  ENSMUST00000159660 Sun2-007 79738650-79742115 protein_coding
  ENSMUST00000159762 Sun2-004 79729613-79742504 retained_intron
  ENSMUST00000160355 Sun2-009 79739839-79742092 protein_coding
  ENSMUST00000162064 Sun2-010 79734108-79735951 retained_intron
  ENSMUST00000162392 Sun2-006 79724070-79742456 retained_intron
  ENSMUST00000162499 Sun2-008 79739732-79742103 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046259ENSMUST00000089311ENSMUST00000100439ENSMUST00000162392
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046259 21.303±4.15 42.594±4.08 23.054±2.51 9.703±2.44 51.977±14.40 28.574±2.24 14.210±2.22 11.073±1.88 8.261±2.88 31.300±4.86 20.684±4.72 20.710±6.33 3.301±1.24 4.468±1.40
ENSMUST00000089311 N/A N/A N/A N/A N/A N/A N/A N/A 0.873±0.05 N/A N/A N/A 1.757±0.00 N/A
ENSMUST00000100439 7.408±2.39 N/A 10.941±2.58 6.043±0.00 5.158±0.00 N/A 6.734±1.43 2.558±0.91 3.028±0.80 5.641±0.00 13.427±2.29 N/A 1.566±0.85 1.902±0.37
ENSMUST00000162392 4.261±0.42 N/A N/A 5.812±0.45 8.597±1.25 4.118±0.31 2.968±0.00 1.485±0.00 1.523±0.51 5.321±1.06 5.312±0.18 4.008±0.00 1.017±0.60 1.217±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XF CIL_0002XF_0002 CGP 15:79690895-79742536
CIL_0005NJ CIL_0005NJ_0002 CGP 15:79724070-79777849

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000784 IDA nuclear chromosome, telomeric region
GO:0000794 IDA condensed nuclear chromosome
GO:0005515 IPI protein binding
GO:0005521 IEA lamin binding
GO:0005635 IDA nuclear envelope
GO:0005637 IDA nuclear inner membrane
GO:0005768 IEA endosome
GO:0006998 IEA nuclear envelope organization
GO:0016021 IEA integral component of membrane
GO:0030335 IMP positive regulation of cell migration
GO:0031022 IMP nuclear migration along microfilament
GO:0031965 IEA nuclear membrane
GO:0034993 IEA SUN-KASH complex
GO:0042802 IEA identical protein binding
GO:0051642 IMP centrosome localization
GO:0090286 IEA cytoskeletal anchoring at nuclear membrane
GO:0090292 IEA nuclear matrix anchoring at nuclear membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086490 SUN2 Sad1 and UNC84 domain containing 2 protein_coding Danio_rerio
ENSG00000100242 SUN2 Sad1 and UNC84 domain containing 2 protein_coding Homo_sapiens

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