C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: EGF-like, fibronectin type III and laminin G domains
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042961 Egflam 10090 - 15:7206120-7398395 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000058593 Egflam-002 7206120-7398304 protein_coding
  ENSMUST00000096494 Egflam-001 7206578-7398351 protein_coding
  ENSMUST00000159726 Egflam-005 7305070-7398261 retained_intron
  ENSMUST00000160207 Egflam-003 7206583-7398395 nonsense_mediated_decay
  ENSMUST00000160273 Egflam-004 7233326-7398269 retained_intron
  ENSMUST00000160314 Egflam-007 7212191-7223069 retained_intron
  ENSMUST00000162105 Egflam-006 7253511-7254768 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058593ENSMUST00000096494ENSMUST00000160207ENSMUST00000160314
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058593 2.680±0.96 0.682±0.32 0.906±0.00 0.579±0.00 2.139±0.95 0.725±0.19 0.791±0.23 1.230±0.64 0.114±0.05 6.738±2.72 1.002±0.10 5.634±2.74 0.328±0.15 2.678±0.32
ENSMUST00000096494 3.351±1.83 0.240±0.03 2.406±0.11 0.776±0.10 2.024±1.09 0.410±0.18 0.704±0.20 1.495±0.46 0.068±0.04 3.227±0.77 N/A 5.831±3.85 0.506±0.44 1.992±0.00
ENSMUST00000160207 N/A 0.574±0.12 N/A 0.353±0.00 1.184±0.00 0.378±0.00 0.390±0.09 N/A N/A N/A N/A 3.473±0.57 0.543±0.00 0.642±0.00
ENSMUST00000160314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.819±2.15 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W3 CIL_0008W3_0002 VISTA 15:7122223-7723664

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005539 IDA glycosaminoglycan binding
GO:0005604 IDA basement membrane
GO:0005614 IDA interstitial matrix
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0019800 IDA peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan
GO:0030054 IEA cell junction
GO:0030198 IDA extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059416 EGFLAM EGF-like, fibronectin type III and laminin G domains protein_coding Danio_rerio
ENSG00000164318 EGFLAM EGF-like, fibronectin type III and laminin G domains protein_coding Homo_sapiens

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