C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: EGF-like, fibronectin type III and laminin G domains
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058593 Egflam-002 ENSMUSG00000042961 10090 - 15:7206120-7398304 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058593
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058593 2.680±0.96 0.682±0.32 0.906±0.00 0.579±0.00 2.139±0.95 0.725±0.19 0.791±0.23 1.230±0.64 0.114±0.05 6.738±2.72 1.002±0.10 5.634±2.74 0.328±0.15 2.678±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W3 CIL_0008W3_0002 VISTA 15:7122223-7723664

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005539 IDA glycosaminoglycan binding
GO:0005604 IDA basement membrane
GO:0005614 IDA interstitial matrix
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0019800 IDA peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan
GO:0030054 IEA cell junction
GO:0030198 IDA extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322350 EGFLAM-001 protein_coding Homo_sapiens 0 3269
ENST00000336740 EGFLAM-002 protein_coding Homo_sapiens 0 2545
ENST00000354891 EGFLAM-004 protein_coding Homo_sapiens 0 3169
ENST00000397202 EGFLAM-003 protein_coding Homo_sapiens 0 1646
ENST00000397210 EGFLAM-005 protein_coding Homo_sapiens 0 793
ENST00000506135 EGFLAM-009 protein_coding Homo_sapiens 0 691
ENST00000513131 EGFLAM-011 retained_intron Homo_sapiens 0 418
ENST00000514476 EGFLAM-010 protein_coding Homo_sapiens 0 763

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