C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: EGF-like, fibronectin type III and laminin G domains
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164318 EGFLAM 9606 + 5:38258409-38465021 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000322350 EGFLAM-001 38258409-38465021 protein_coding
  ENST00000336740 EGFLAM-002 38403541-38464388 protein_coding
  ENST00000354891 EGFLAM-004 38258409-38464549 protein_coding
  ENST00000397202 EGFLAM-003 38403548-38464549 protein_coding
  ENST00000397210 EGFLAM-005 38445540-38464556 protein_coding
  ENST00000504709 EGFLAM-012 38258665-38352331 nonsense_mediated_decay
  ENST00000506135 EGFLAM-009 38445571-38464137 protein_coding
  ENST00000508131 EGFLAM-008 38445596-38463865 protein_coding
  ENST00000508868 EGFLAM-007 38445520-38451639 retained_intron
  ENST00000513131 EGFLAM-011 38462590-38464549 retained_intron
  ENST00000514476 EGFLAM-010 38448256-38464051 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000322350ENST00000336740ENST00000354891ENST00000397202ENST00000397210ENST00000504709ENST00000508131ENST00000508868
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000322350 0.879±0.00 N/A 0.063±0.00 N/A 1.589±1.15 1.315±0.00 1.624±0.86 N/A N/A 0.668±0.00 1.516±0.00 5.103±3.74 10.648±2.50 1.975±0.00
ENST00000336740 N/A N/A N/A 0.070±0.00 N/A N/A 0.255±0.00 N/A N/A N/A N/A 1.109±0.00 N/A 2.843±0.23
ENST00000354891 N/A N/A N/A N/A N/A N/A 2.229±0.00 0.173±0.00 0.378±0.00 0.333±0.23 2.283±0.00 0.867±0.00 6.485±1.51 2.567±0.00
ENST00000397202 N/A N/A N/A 0.066±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397210 7.908±0.00 9.195±0.00 N/A 0.381±0.00 4.408±2.71 2.064±0.00 N/A 3.088±0.00 0.664±0.05 1.654±1.35 4.850±2.11 6.324±0.85 10.710±2.99 8.124±0.00
ENST00000504709 N/A N/A N/A N/A N/A N/A N/A 0.442±0.00 N/A N/A N/A 0.720±0.00 N/A N/A
ENST00000508131 N/A N/A N/A 0.131±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508868 N/A N/A N/A N/A 2.188±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005539 IEA glycosaminoglycan binding
GO:0005604 IEA basement membrane
GO:0005614 IEA interstitial matrix
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0019800 IEA peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan
GO:0030054 IEA cell junction
GO:0030198 IEA extracellular matrix organization
GO:0031012 IEA extracellular matrix
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059416 EGFLAM EGF-like, fibronectin type III and laminin G domains protein_coding Danio_rerio
ENSMUSG00000042961 Egflam EGF-like, fibronectin type III and laminin G domains protein_coding Mus_musculus

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