C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SUMO-interacting motifs containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043183 Simc1 10090 + 13:54503779-54551290 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000118072 Simc1-002 54503779-54551290 protein_coding
  ENSMUST00000121401 Simc1-001 54503779-54551290 protein_coding
  ENSMUST00000123852 Simc1-005 54512145-54524259 processed_transcript
  ENSMUST00000126506 Simc1-007 54546783-54550786 retained_intron
  ENSMUST00000138869 Simc1-003 54503809-54539856 nonsense_mediated_decay
  ENSMUST00000150011 Simc1-006 54528937-54539973 retained_intron
  ENSMUST00000159721 Simc1-008 54503804-54539857 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastLiverOvaryPlacentaTestisENSMUST00000118072ENSMUST00000121401
Transcript ID Adipose Adrenal Brain Breast Liver Ovary Placenta Testis
ENSMUST00000118072 N/A N/A N/A N/A N/A N/A 2.787±0.00 1.871±0.00
ENSMUST00000121401 5.564±0.63 9.717±1.36 6.223±3.25 3.775±0.19 2.002±0.62 7.161±3.45 2.246±1.21 8.241±3.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0002DK CIL_0002DK_0002 CGP 13:54503779-54565435

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0032184 IEA SUMO polymer binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089939 SIMC1 SUMO-interacting motifs containing 1 protein_coding Danio_rerio
ENSG00000170085 SIMC1 SUMO-interacting motifs containing 1 protein_coding Homo_sapiens

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