C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059571 Pcdhb19-201 ENSMUSG00000043313 10090 + 18:37496997-37504127 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059571
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059571 0.717±0.30 1.697±0.20 0.336±0.20 0.734±0.25 0.462±0.05 0.615±0.09 0.351±0.03 0.204±0.05 0.030±0.02 0.889±0.07 0.052±0.01 1.225±1.00 0.024±0.02 0.028±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000U CGP 18:37489465-37504127
CIL_00062S CIL_00062S_000G CGP 18:37496997-37507658

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231136 PCDHB6-001 protein_coding Homo_sapiens 3e-22 111
ENST00000239446 PCDHB10-001 protein_coding Homo_sapiens 0 889
ENST00000341948 PCDHB13-001 protein_coding Homo_sapiens 0 850
ENST00000515856 PCDHB10-201 protein_coding Homo_sapiens 0 889
ENST00000622991 PCDHB6-002 protein_coding Homo_sapiens 3e-22 111

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