C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 48
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055131 Usp48-001 ENSMUSG00000043411 10090 + 4:137594207-137658531 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055131
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055131 3.030±1.20 4.783±0.23 6.402±2.73 2.590±0.50 2.110±0.56 0.901±0.13 2.071±0.67 2.968±1.70 3.462±0.84 0.979±0.24 9.715±2.79 8.155±2.53 3.399±0.35

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004843 IEA ubiquitin-specific protease activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0006511 IEA ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308271 USP48-001 protein_coding Homo_sapiens 0 2791
ENST00000374730 USP48-012 nonsense_mediated_decay Homo_sapiens 0 547
ENST00000374732 USP48-002 protein_coding Homo_sapiens 0 1059
ENST00000400301 USP48-201 protein_coding Homo_sapiens 0 2791
ENST00000421625 USP48-006 protein_coding Homo_sapiens 0 1748
ENST00000464577 USP48-003 retained_intron Homo_sapiens 0 424
ENST00000479177 USP48-007 processed_transcript Homo_sapiens 0 287
ENST00000487880 USP48-016 processed_transcript Homo_sapiens 0 484
ENST00000489108 USP48-005 processed_transcript Homo_sapiens 0 357
ENST00000526044 USP48-013 protein_coding Homo_sapiens 0 614
ENST00000529637 USP48-009 protein_coding Homo_sapiens 0 2296
ENST00000532737 USP48-010 protein_coding Homo_sapiens 0 527
ENST00000534705 USP48-014 protein_coding Homo_sapiens 0 505

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