C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein 536
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043456 Zfp536 10090 - 7:37472135-37773641 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056338 Zfp536-001 37479109-37769962 protein_coding
  ENSMUST00000175941 Zfp536-003 37479104-37769624 protein_coding
  ENSMUST00000176114 Zfp536-004 37479122-37770980 protein_coding
  ENSMUST00000176129 Zfp536-002 37472135-37479986 protein_coding
  ENSMUST00000176137 Zfp536-006 37710068-37773577 processed_transcript
  ENSMUST00000176205 Zfp536-005 37479177-37772875 protein_coding
  ENSMUST00000176297 Zfp536-007 37716318-37773562 retained_intron
  ENSMUST00000176534 Zfp536-008 37569629-37773641 protein_coding
  ENSMUST00000176680 Zfp536-009 37569499-37770782 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056338ENSMUST00000175941ENSMUST00000176114ENSMUST00000176129ENSMUST00000176205ENSMUST00000176534
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056338 N/A 0.305±0.09 N/A 2.234±0.51 N/A 0.187±0.02 0.318±0.00 0.079±0.00 N/A 0.051±0.01 N/A N/A N/A N/A
ENSMUST00000175941 N/A 0.293±0.06 N/A N/A 0.103±0.00 0.288±0.05 N/A N/A 0.005±0.00 N/A 0.090±0.00 N/A N/A N/A
ENSMUST00000176114 0.042±0.03 0.330±0.03 N/A N/A 0.108±0.04 0.180±0.00 0.307±0.06 0.017±0.00 0.006±0.00 0.042±0.03 0.042±0.02 0.358±0.17 0.023±0.01 0.300±0.15
ENSMUST00000176129 0.035±0.01 N/A 3.041±1.36 2.958±0.10 0.149±0.05 N/A 0.234±0.02 0.057±0.03 0.018±0.01 0.099±0.04 0.105±0.03 0.251±0.13 0.031±0.02 0.281±0.00
ENSMUST00000176205 N/A N/A N/A 3.325±1.66 N/A 0.573±0.18 N/A N/A N/A 0.056±0.00 0.021±0.00 0.056±0.00 N/A 0.561±0.16
ENSMUST00000176534 N/A N/A N/A N/A 0.275±0.00 N/A N/A N/A 0.014±0.00 N/A 0.141±0.04 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OB CIL_0007OB_0005 UCNEbase 7:35865981-38051259
CIL_000832 CIL_000832_0002 VISTA 7:37214718-37816040
CIL_00088T CIL_00088T_0002 VISTA 7:37300137-37901254
CIL_000907 CIL_000907_0002 VISTA 7:37327774-37929438
CIL_000825 CIL_000825_0002 VISTA 7:37349561-37952733
CIL_000833 CIL_000833_0002 VISTA 7:37423252-38024496
CIL_0007PW CIL_0007PW_0002 VISTA 7:37443015-38044606

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0044323 IDA retinoic acid-responsive element binding
GO:0045665 IDA negative regulation of neuron differentiation
GO:0046872 IEA metal ion binding
GO:0048387 IDA negative regulation of retinoic acid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022251 znf536 zinc finger protein 536 protein_coding Danio_rerio
ENSG00000198597 ZNF536 zinc finger protein 536 protein_coding Homo_sapiens

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