C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thyroid hormone receptor associated protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043962 Thrap3 10090 - 4:126164082-126202760 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000080919 Thrap3-001 126164082-126202760 protein_coding
  ENSMUST00000106141 Thrap3-013 126186496-126202390 protein_coding
  ENSMUST00000106142 Thrap3-004 126172843-126202589 protein_coding
  ENSMUST00000123008 Thrap3-010 126180563-126194391 nonsense_mediated_decay
  ENSMUST00000124327 Thrap3-008 126193916-126202670 processed_transcript
  ENSMUST00000130334 Thrap3-006 126186484-126202647 protein_coding
  ENSMUST00000130477 Thrap3-009 126186065-126202623 retained_intron
  ENSMUST00000136157 Thrap3-007 126180791-126201117 protein_coding
  ENSMUST00000140390 Thrap3-002 126164086-126168449 processed_transcript
  ENSMUST00000142125 Thrap3-005 126186490-126202376 protein_coding
  ENSMUST00000151728 Thrap3-003 126178774-126202612 retained_intron
  ENSMUST00000154702 Thrap3-011 126165555-126167476 processed_transcript
  ENSMUST00000163176 Thrap3-014 126167048-126173527 nonsense_mediated_decay
  ENSMUST00000163306 Thrap3-017 126175366-126178526 protein_coding
  ENSMUST00000163459 Thrap3-015 126165541-126175447 protein_coding
  ENSMUST00000168568 Thrap3-012 126186246-126202659 retained_intron
  ENSMUST00000169403 Thrap3-018 126180800-126202589 protein_coding
  ENSMUST00000169855 Thrap3-016 126178788-126180147 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080919ENSMUST00000140390ENSMUST00000151728
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080919 6.465±1.59 11.254±5.78 15.428±5.87 17.201±5.16 6.832±3.91 8.038±5.29 5.434±0.00 3.551±1.17 13.043±12.23 9.054±3.72 10.580±4.21 16.206±15.31 25.373±11.61 13.648±5.73
ENSMUST00000140390 5.427±2.37 5.477±1.31 11.610±0.37 6.435±0.00 6.590±1.46 6.439±1.58 2.539±0.00 3.681±0.80 5.017±3.18 7.003±1.95 N/A 7.755±2.54 11.178±0.01 N/A
ENSMUST00000151728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.989±2.48 9.872±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FN CIL_0000FN_0002 CGP 4:126150602-126202760
CIL_0002JQ CIL_0002JQ_0002 CGP 4:126164082-126256343

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0000956 ISS nuclear-transcribed mRNA catabolic process
GO:0001104 IEA RNA polymerase II transcription cofactor activity
GO:0003712 IEA transcription cofactor activity
GO:0003713 IEA transcription coactivator activity
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0006366 IC transcription from RNA polymerase II promoter
GO:0006367 IEA transcription initiation from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016592 IDA mediator complex
GO:0030518 IEA intracellular steroid hormone receptor signaling pathway
GO:0030521 IEA androgen receptor signaling pathway
GO:0035145 ISS exon-exon junction complex
GO:0044822 IEA poly(A) RNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046966 IEA thyroid hormone receptor binding
GO:0048026 ISS positive regulation of mRNA splicing, via spliceosome
GO:0048255 ISS mRNA stabilization
GO:0051219 ISS phosphoprotein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003513 thrap3b thyroid hormone receptor associated protein 3b protein_coding Danio_rerio
ENSDARG00000040095 BX321921.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000044459 thrap3a thyroid hormone receptor associated protein 3a protein_coding Danio_rerio
ENSG00000054118 THRAP3 thyroid hormone receptor associated protein 3 protein_coding Homo_sapiens

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