C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyroid hormone receptor associated protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080919 Thrap3-001 ENSMUSG00000043962 10090 - 4:126164082-126202760 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080919
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080919 6.465±1.59 11.254±5.78 15.428±5.87 17.201±5.16 6.832±3.91 8.038±5.29 5.434±0.00 3.551±1.17 13.043±12.23 9.054±3.72 10.580±4.21 16.206±15.31 25.373±11.61 13.648±5.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FN CIL_0000FN_0002 CGP 4:126150602-126202760
CIL_0002JQ CIL_0002JQ_0002 CGP 4:126164082-126256343

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0000956 ISS nuclear-transcribed mRNA catabolic process
GO:0001104 IEA RNA polymerase II transcription cofactor activity
GO:0003712 IEA transcription cofactor activity
GO:0003713 IEA transcription coactivator activity
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0006366 IC transcription from RNA polymerase II promoter
GO:0006367 IEA transcription initiation from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016592 IDA mediator complex
GO:0030518 IEA intracellular steroid hormone receptor signaling pathway
GO:0030521 IEA androgen receptor signaling pathway
GO:0035145 ISS exon-exon junction complex
GO:0044822 IEA poly(A) RNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046966 IEA thyroid hormone receptor binding
GO:0048026 ISS positive regulation of mRNA splicing, via spliceosome
GO:0048255 ISS mRNA stabilization
GO:0051219 ISS phosphoprotein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354618 THRAP3-001 protein_coding Homo_sapiens 0 3602
ENST00000411753 THRAP3P1-001 processed_pseudogene Homo_sapiens 0 2002
ENST00000445066 AC073109.2-001 processed_pseudogene Homo_sapiens 0 793
ENST00000466743 THRAP3-005 processed_transcript Homo_sapiens 0 580
ENST00000469141 THRAP3-002 protein_coding Homo_sapiens 0 3602
ENST00000474080 WWTR1-002 processed_transcript Homo_sapiens 0 294
ENST00000478853 THRAP3-003 protein_coding Homo_sapiens 0 198
ENST00000556012 CTD-2343P13.1-001 processed_pseudogene Homo_sapiens 0 704

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