C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G-rich RNA sequence binding factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078945 Grsf1-001 ENSMUSG00000044221 10090 - 5:88659448-88676171 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078945
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078945 17.520±4.88 103.999±21.53 17.133±4.95 16.761±4.31 20.261±8.45 30.209±2.54 18.646±6.56 38.313±7.64 20.115±6.46 17.336±2.85 21.504±3.23 48.937±19.63 14.710±6.59 5.277±1.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LT CIL_0005LT_0003 CGP 5:88583574-88676171
CIL_00051M CIL_00051M_0003 CGP 5:88659448-88762058

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005739 IDA mitochondrion
GO:0006397 IEA mRNA processing
GO:0008033 IEA tRNA processing
GO:0009952 IMP anterior/posterior pattern specification
GO:0016331 IMP morphogenesis of embryonic epithelium
GO:0042645 IEA mitochondrial nucleoid
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254799 GRSF1-001 protein_coding Homo_sapiens 0 1807
ENST00000499044 GRSF1-004 protein_coding Homo_sapiens 0 1450
ENST00000502323 GRSF1-006 protein_coding Homo_sapiens 0 1454
ENST00000505068 GRSF1-002 retained_intron Homo_sapiens 0 1452
ENST00000506453 GRSF1-017 nonsense_mediated_decay Homo_sapiens 0 726
ENST00000514161 GRSF1-005 protein_coding Homo_sapiens 0 1450
ENST00000545193 GRSF1-201 protein_coding Homo_sapiens 0 1500

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