C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Holliday junction recognition protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000123485 HJURP 9606 - 2:233833416-233854566 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373395 HJURP-003 233844225-233846135 retained_intron
  ENST00000411486 HJURP-001 233836703-233854566 protein_coding
  ENST00000414924 HJURP-007 233840815-233854566 protein_coding
  ENST00000432087 HJURP-201 233836701-233854566 protein_coding
  ENST00000433484 HJURP-005 233833416-233840738 nonsense_mediated_decay
  ENST00000434039 HJURP-008 233841893-233845799 processed_transcript
  ENST00000441687 HJURP-202 233836701-233854566 protein_coding
  ENST00000453122 HJURP-006 233842116-233854535 nonsense_mediated_decay
  ENST00000454020 HJURP-002 233841851-233854474 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000411486ENST00000414924ENST00000433484ENST00000434039ENST00000441687ENST00000453122
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000411486 N/A N/A N/A N/A N/A 0.904±0.00 N/A 0.131±0.03 0.046±0.00 N/A N/A 2.252±1.39 0.848±0.04 3.014±0.00
ENST00000414924 N/A N/A N/A N/A 0.267±0.12 0.960±0.00 N/A N/A 0.068±0.00 N/A N/A N/A 0.505±0.00 N/A
ENST00000433484 N/A 0.332±0.00 N/A 0.073±0.00 0.141±0.00 N/A 0.136±0.02 N/A N/A 0.294±0.00 0.014±0.00 3.637±0.00 N/A N/A
ENST00000434039 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.894±0.00 N/A N/A N/A N/A
ENST00000441687 0.102±0.00 N/A 0.020±0.00 0.029±0.02 0.186±0.08 0.407±0.00 0.043±0.00 N/A 0.018±0.00 N/A 0.004±0.00 N/A 0.514±0.00 N/A
ENST00000453122 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.926±0.13 N/A N/A 1.501±0.00 8.972±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001B0 CIL_0001B0_0001 CGP 2:233760248-233833423
CIL_0007H9 CIL_0007H9_0001 CGP 2:233775679-233854566
CIL_0007H4 CIL_0007H4_0001 CGP 2:233833416-234019522

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000775 IDA chromosome, centromeric region
GO:0000777 IDA condensed chromosome kinetochore
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006334 TAS nucleosome assembly
GO:0007049 IEA cell cycle
GO:0007059 IMP chromosome segregation
GO:0034080 IMP CENP-A containing nucleosome assembly
GO:0042393 IPI:IEA histone binding
GO:0042802 IPI identical protein binding
GO:0043254 IDA regulation of protein complex assembly
GO:0051101 IDA regulation of DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000044783 Hjurp Holliday junction recognition protein protein_coding Mus_musculus

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