C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007H4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000123485-ENSG00000144481 CGP 9606 2:233833416-234019522
GeneTranscriptPositionBiotype
ENSG00000144481 (TRPM8)
transient receptor potential cation channel, subfamily M, member 8 		ENST00000324695 (TRPM8-001) 233917398-234019522 protein_coding
ENST00000355722 (TRPM8-002) 233929716-233942989 protein_coding
ENST00000409625 (TRPM8-003) 233929742-233942879 protein_coding
ENST00000433712 (TRPM8-201) 233917398-234019522 protein_coding
ENST00000439148 (TRPM8-006) 233981808-234018438 nonsense_mediated_decay
ENST00000444298 (TRPM8-013) 233917405-234017329 nonsense_mediated_decay
ENST00000456930 (TRPM8-014) 233966618-234017843 protein_coding
ENST00000466594 (TRPM8-011) 234013225-234014687 processed_transcript
ENST00000475044 (TRPM8-010) 233968162-233996516 processed_transcript
ENST00000477103 (TRPM8-015) 233980122-233985795 retained_intron
ENST00000477698 (TRPM8-005) 233966635-233969912 retained_intron
ENST00000479332 (TRPM8-009) 233933740-233937450 processed_transcript
ENST00000487033 (TRPM8-012) 233953709-233960924 retained_intron
ENST00000490797 (TRPM8-004) 233965982-233970539 retained_intron
ENSG00000224287 (MSL3P1)
male-specific lethal 3 homolog (Drosophila) pseudogene 1 		ENST00000438684 (MSL3P1-002) 233865437-233868444 processed_transcript
ENST00000440028 (MSL3P1-001) 233866129-233868230 transcribed_processed_pseudogene
ENSG00000274951 (AC005538.1)
 ENST00000615649 (AC005538.1-201) 234012157-234012265 miRNA
ENSG00000279809 (AC005538.3)
 ENST00000623215 (AC005538.3-002) 233865496-233867359 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0007H4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000044783-ENSMUSG00000036251 CGP 10090 1:88262471-88389293
GeneTranscriptPositionBiotype
ENSMUSG00000036251 (Trpm8)
transient receptor potential cation channel, subfamily M, member 8 		ENSMUST00000040210 (Trpm8-002) 88306759-88389293 protein_coding
ENSMUST00000113114 (Trpm8-001) 88303283-88388851 protein_coding
ENSMUST00000148138 (Trpm8-003) 88277661-88308073 processed_transcript
ENSMUST00000171176 (Trpm8-201) 88318913-88388851 protein_coding
ENSMUSG00000044783 (Hjurp)
Holliday junction recognition protein 		ENSMUST00000054674 (Hjurp-001) 88262471-88277633 protein_coding
ENSMUST00000065420 (Hjurp-002) 88264828-88277557 protein_coding
ENSMUST00000126739 (Hjurp-005) 88274712-88277579 retained_intron
ENSMUST00000127446 (Hjurp-004) 88266349-88269392 protein_coding
ENSMUST00000128532 (Hjurp-007) 88269337-88273119 retained_intron
ENSMUST00000147393 (Hjurp-003) 88264978-88277506 protein_coding
ENSMUST00000148384 (Hjurp-006) 88269378-88270947 retained_intron
ENSMUSG00000085420 (4930453O03Rik)
RIKEN cDNA 4930453O03 gene 		ENSMUST00000147594 (4930453O03Rik-001) 88347489-88352930 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007H4_0001ENSG00000144481ENST00000324695ENST00000355722ENST00000409625ENST00000433712ENST00000439148ENST00000444298ENST00000456930ENST00000466594ENST00000475044ENST00000477103ENST00000477698ENST00000479332ENST00000487033ENST00000490797ENSG00000224287ENST00000438684ENST00000440028ENSG00000274951ENST00000615649ENSG00000279809ENST00000623215CIL_0007H4_0002ENSMUSG00000036251ENSMUST00000040210ENSMUST00000113114ENSMUST00000148138ENSMUST00000171176ENSMUSG00000044783ENSMUST00000054674ENSMUST00000065420ENSMUST00000126739ENSMUST00000127446ENSMUST00000128532ENSMUST00000147393ENSMUST00000148384ENSMUSG00000085420ENSMUST00000147594
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007H4_0001ENSG00000144481ENST00000324695ENST00000355722ENST00000409625ENST00000433712ENST00000439148ENST00000456930ENST00000475044ENST00000477103ENST00000490797ENSG00000224287ENST00000438684ENST00000440028ENSG00000274951ENST00000615649ENSG00000279809ENST00000623215CIL_0007H4_0002ENSMUSG00000036251ENSMUST00000040210ENSMUST00000171176ENSMUSG00000044783ENSMUST00000054674ENSMUST00000065420ENSMUST00000126739ENSMUSG00000085420ENSMUST00000147594
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144481 ENST00000324695 N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.120±0.00
ENST00000355722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.354±0.00
ENST00000409625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.954±0.00
ENST00000433712 0.007±0.00 N/A N/A N/A 0.004±0.00 0.008±0.00 N/A N/A N/A N/A N/A 0.007±0.00 0.005±0.00 0.065±0.00
ENST00000439148 N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A 0.006±0.00 N/A 0.232±0.00
ENST00000444298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456930 N/A N/A N/A 0.115±0.00 N/A N/A 0.055±0.00 5.910±0.00 4.068±0.00 N/A N/A N/A N/A N/A
ENST00000466594 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475044 N/A N/A N/A N/A 0.032±0.00 N/A N/A 0.131±0.00 N/A N/A N/A 0.041±0.00 N/A N/A
ENST00000477103 N/A N/A 1.212±0.00 0.876±0.00 N/A 0.342±0.00 N/A 10.474±0.00 N/A N/A N/A N/A N/A N/A
ENST00000477698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490797 N/A 0.451±0.00 N/A N/A 0.104±0.00 0.119±0.00 0.070±0.00 N/A N/A N/A 0.065±0.00 0.029±0.00 N/A N/A
ENSG00000224287 ENST00000438684 0.393±0.00 N/A N/A 0.347±0.00 0.284±0.00 0.207±0.00 0.155±0.00 0.585±0.00 0.853±0.00 0.288±0.00 0.196±0.00 0.847±0.41 1.020±0.29 13.475±7.23
ENST00000440028 N/A N/A N/A N/A N/A 0.223±0.00 0.102±0.00 0.242±0.00 N/A 0.050±0.00 N/A 0.422±0.08 0.348±0.09 9.145±0.00
ENSG00000274951 ENST00000615649 0.948±0.00 3.288±0.00 N/A 1.677±0.00 1.073±0.00 0.478±0.00 0.707±0.00 1.295±0.00 0.713±0.00 N/A N/A N/A N/A 0.693±0.00
ENSG00000279809 ENST00000623215 N/A 0.297±0.00 0.229±0.00 0.473±0.00 0.580±0.37 0.168±0.00 N/A 0.452±0.00 0.264±0.00 0.222±0.00 N/A 0.820±0.34 0.155±0.00 10.100±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036251 ENSMUST00000040210 N/A N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.002±0.00 0.354±0.06
ENSMUST00000113114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171176 0.009±0.00 N/A N/A 0.026±0.02 0.041±0.01 0.016±0.00 0.015±0.00 0.014±0.00 0.014±0.01 N/A N/A 0.007±0.00 0.009±0.00 2.425±0.27
ENSMUSG00000044783 ENSMUST00000054674 9.540±6.90 5.990±0.01 29.926±4.35 36.630±26.62 9.125±3.77 12.322±7.42 2.287±0.93 3.967±1.47 28.004±18.03 13.302±5.77 1.507±0.35 33.695±15.41 19.790±17.61 7.321±3.21
ENSMUST00000065420 N/A N/A N/A 3.387±0.00 N/A N/A N/A N/A N/A N/A 1.122±0.00 21.836±1.71 5.680±3.04 7.984±0.00
ENSMUST00000126739 N/A N/A N/A 6.313±5.03 N/A N/A N/A N/A N/A N/A 0.747±0.00 11.795±0.00 N/A N/A
ENSMUST00000127446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085420 ENSMUST00000147594 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A 0.017±0.00 2.321±0.24

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