C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Leber congenital amaurosis 5-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000045275 Lca5l 10090 - 16:96158407-96192257 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000054855 Lca5l-201 96159068-96192257 protein_coding
  ENSMUST00000113804 Lca5l-001 96158407-96192250 protein_coding
  ENSMUST00000142620 Lca5l-002 96160499-96192250 retained_intron
  ENSMUST00000154445 Lca5l-003 96181433-96192257 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054855ENSMUST00000113804ENSMUST00000142620ENSMUST00000154445
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054855 N/A 0.447±0.13 N/A N/A 0.226±0.00 0.132±0.03 N/A 0.053±0.01 N/A 0.222±0.01 N/A 0.924±0.36 0.079±0.00 21.505±22.35
ENSMUST00000113804 0.256±0.12 0.428±0.19 0.318±0.07 0.502±0.25 0.168±0.10 0.150±0.05 0.107±0.04 0.068±0.04 0.017±0.00 0.283±0.12 0.257±0.04 0.937±0.66 0.194±0.13 20.149±14.91
ENSMUST00000142620 N/A N/A N/A 0.128±0.00 0.073±0.00 0.075±0.02 N/A N/A N/A N/A N/A N/A 0.023±0.00 3.456±0.18
ENSMUST00000154445 N/A 0.369±0.04 0.501±0.00 0.850±0.15 0.158±0.06 0.091±0.03 0.085±0.04 0.126±0.00 0.038±0.02 0.222±0.00 0.070±0.02 0.978±0.19 0.089±0.05 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003GP CIL_0003GP_0002 CGP 16:96145407-96192257
CIL_0004WM CIL_0004WM_0002 CGP 16:96158407-96228933

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000157578 LCA5L Leber congenital amaurosis 5-like protein_coding Homo_sapiens

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