C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Leber congenital amaurosis 5-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000157578 LCA5L 9606 - 21:39405844-39445805 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000288350 LCA5L-001 39405844-39445777 protein_coding
  ENST00000358268 LCA5L-002 39405860-39445733 protein_coding
  ENST00000380671 LCA5L-201 39405844-39428522 protein_coding
  ENST00000411566 LCA5L-013 39428215-39445733 protein_coding
  ENST00000415863 LCA5L-010 39428285-39445769 protein_coding
  ENST00000418018 LCA5L-019 39423245-39445760 protein_coding
  ENST00000426783 LCA5L-015 39428305-39445769 protein_coding
  ENST00000434281 LCA5L-018 39428208-39445803 protein_coding
  ENST00000438404 LCA5L-009 39428210-39445719 protein_coding
  ENST00000448288 LCA5L-014 39428172-39445778 protein_coding
  ENST00000451131 LCA5L-008 39428462-39445752 protein_coding
  ENST00000456017 LCA5L-017 39428402-39445780 protein_coding
  ENST00000459939 LCA5L-021 39422988-39445761 processed_transcript
  ENST00000466954 LCA5L-012 39423420-39445733 processed_transcript
  ENST00000468009 LCA5L-022 39428222-39438936 processed_transcript
  ENST00000480612 LCA5L-011 39443459-39445753 retained_intron
  ENST00000484878 LCA5L-016 39411718-39445752 processed_transcript
  ENST00000485895 LCA5L-006 39421560-39445777 protein_coding
  ENST00000490184 LCA5L-007 39423240-39445775 processed_transcript
  ENST00000491625 LCA5L-003 39422412-39445805 retained_intron
  ENST00000495240 LCA5L-020 39405978-39411147 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyMuscleOvaryTestisENST00000288350ENST00000380671ENST00000434281ENST00000484878ENST00000485895ENST00000495240
Transcript ID Bladder Kidney Muscle Ovary Testis
ENST00000288350 0.303±0.00 N/A N/A N/A N/A
ENST00000380671 N/A N/A N/A N/A 24.415±0.00
ENST00000434281 N/A N/A 0.864±0.00 N/A N/A
ENST00000484878 N/A 0.764±0.00 N/A N/A N/A
ENST00000485895 N/A N/A N/A 0.192±0.00 N/A
ENST00000495240 N/A N/A N/A N/A 85.740±53.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003GM CIL_0003GM_0001 CGP 21:39342315-39428528
CIL_0003GP CIL_0003GP_0001 CGP 21:39380244-39445805
CIL_0004WM CIL_0004WM_0001 CGP 21:39405844-39515506

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000045275 Lca5l Leber congenital amaurosis 5-like protein_coding Mus_musculus

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