C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004WM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157578-ENSG00000185437 CGP 9606 21:39405844-39515506
GeneTranscriptPositionBiotype
ENSG00000157578 (LCA5L)
Leber congenital amaurosis 5-like 		ENST00000288350 (LCA5L-001) 39405844-39445777 protein_coding
ENST00000358268 (LCA5L-002) 39405860-39445733 protein_coding
ENST00000380671 (LCA5L-201) 39405844-39428522 protein_coding
ENST00000411566 (LCA5L-013) 39428215-39445733 protein_coding
ENST00000415863 (LCA5L-010) 39428285-39445769 protein_coding
ENST00000418018 (LCA5L-019) 39423245-39445760 protein_coding
ENST00000426783 (LCA5L-015) 39428305-39445769 protein_coding
ENST00000434281 (LCA5L-018) 39428208-39445803 protein_coding
ENST00000438404 (LCA5L-009) 39428210-39445719 protein_coding
ENST00000448288 (LCA5L-014) 39428172-39445778 protein_coding
ENST00000451131 (LCA5L-008) 39428462-39445752 protein_coding
ENST00000456017 (LCA5L-017) 39428402-39445780 protein_coding
ENST00000459939 (LCA5L-021) 39422988-39445761 processed_transcript
ENST00000466954 (LCA5L-012) 39423420-39445733 processed_transcript
ENST00000468009 (LCA5L-022) 39428222-39438936 processed_transcript
ENST00000480612 (LCA5L-011) 39443459-39445753 retained_intron
ENST00000484878 (LCA5L-016) 39411718-39445752 processed_transcript
ENST00000485895 (LCA5L-006) 39421560-39445777 protein_coding
ENST00000490184 (LCA5L-007) 39423240-39445775 processed_transcript
ENST00000491625 (LCA5L-003) 39422412-39445805 retained_intron
ENST00000495240 (LCA5L-020) 39405978-39411147 processed_transcript
ENSG00000182093 (WRB)
tryptophan rich basic protein 		ENST00000333781 (WRB-001) 39380244-39397889 protein_coding
ENST00000380708 (WRB-004) 39387765-39397889 protein_coding
ENST00000380713 (WRB-009) 39386093-39393280 protein_coding
ENST00000398753 (WRB-002) 39380458-39397116 protein_coding
ENST00000415847 (WRB-013) 39391778-39406446 protein_coding
ENST00000442773 (WRB-003) 39380487-39390803 protein_coding
ENST00000466787 (WRB-006) 39387791-39397254 nonsense_mediated_decay
ENST00000471468 (WRB-008) 39380414-39391205 retained_intron
ENST00000476914 (WRB-017) 39425871-39428528 processed_transcript
ENST00000478273 (WRB-018) 39410869-39428528 protein_coding
ENST00000480690 (WRB-016) 39425919-39428528 processed_transcript
ENST00000487869 (WRB-005) 39380394-39392046 retained_intron
ENST00000490860 (WRB-007) 39392896-39397104 retained_intron
ENST00000623703 (WRB-019) 39380354-39414288 nonsense_mediated_decay
ENSG00000185437 (SH3BGR)
SH3 domain binding glutamate-rich protein 		ENST00000333634 (SH3BGR-001) 39451830-39515506 protein_coding
ENST00000380631 (SH3BGR-006) 39445942-39515207 protein_coding
ENST00000380634 (SH3BGR-007) 39445865-39515355 protein_coding
ENST00000380637 (SH3BGR-002) 39445855-39515506 protein_coding
ENST00000423596 (SH3BGR-010) 39462534-39511775 protein_coding
ENST00000440288 (SH3BGR-005) 39445931-39511706 protein_coding
ENST00000447939 (SH3BGR-009) 39499823-39515506 protein_coding
ENST00000452550 (SH3BGR-008) 39452123-39515506 protein_coding
ENST00000458295 (SH3BGR-004) 39445875-39515270 protein_coding
ENSG00000228349 (RPS26P4)
ribosomal protein S26 pseudogene 4 		ENST00000431743 (RPS26P4-001) 39491544-39491898 processed_pseudogene
ENSG00000235808 (MYL6P2)
myosin, light chain 6 pseudogene 2 		ENST00000450079 (MYL6P2-001) 39488327-39488760 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0004WM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045275-ENSMUSG00000040666 CGP 10090 16:96158407-96228933
GeneTranscriptPositionBiotype
ENSMUSG00000040666 (Sh3bgr)
SH3-binding domain glutamic acid-rich protein 		ENSMUST00000048770 (Sh3bgr-001) 96200470-96228933 protein_coding
ENSMUST00000123728 (Sh3bgr-201) 96200671-96228928 protein_coding
ENSMUST00000129904 (Sh3bgr-002) 96205719-96220591 protein_coding
ENSMUST00000132424 (Sh3bgr-005) 96200729-96224591 protein_coding
ENSMUST00000145069 (Sh3bgr-006) 96220499-96228925 protein_coding
ENSMUST00000157060 (Sh3bgr-003) 96206643-96224563 protein_coding
ENSMUST00000166952 (Sh3bgr-004) 96200704-96220591 protein_coding
ENSMUST00000171181 (Sh3bgr-202) 96200671-96224560 protein_coding
ENSMUSG00000045275 (Lca5l)
Leber congenital amaurosis 5-like 		ENSMUST00000054855 (Lca5l-201) 96159068-96192257 protein_coding
ENSMUST00000113804 (Lca5l-001) 96158407-96192250 protein_coding
ENSMUST00000142620 (Lca5l-002) 96160499-96192250 retained_intron
ENSMUST00000154445 (Lca5l-003) 96181433-96192257 processed_transcript

Mus musculus Ensembl (GRCm38)

Genome
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Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004WM_0001ENSG00000157578ENST00000288350ENST00000380671ENST00000434281ENST00000484878ENST00000485895ENST00000495240ENSG00000182093ENST00000333781ENST00000380708ENST00000380713ENST00000398753ENST00000466787ENST00000487869ENST00000490860ENST00000623703ENSG00000185437ENST00000333634ENST00000380631ENST00000380634ENST00000380637ENST00000423596ENST00000440288ENST00000447939ENST00000452550ENST00000458295ENSG00000228349ENST00000431743ENSG00000235808ENST00000450079CIL_0004WM_0002ENSMUSG00000040666ENSMUST00000048770ENSMUST00000123728ENSMUST00000129904ENSMUST00000145069ENSMUST00000157060ENSMUST00000166952ENSMUST00000171181ENSMUSG00000045275ENSMUST00000054855ENSMUST00000113804ENSMUST00000142620ENSMUST00000154445
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000157578 ENST00000288350 N/A N/A 0.303±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000358268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000380671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.415±0.00
ENST00000411566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.864±0.00 N/A N/A N/A
ENST00000438404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484878 N/A N/A N/A N/A N/A N/A N/A 0.764±0.00 N/A N/A N/A N/A N/A N/A
ENST00000485895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.192±0.00 N/A N/A
ENST00000490184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 85.740±53.03
ENSG00000182093 ENST00000333781 6.095±0.00 9.347±0.00 0.843±0.00 18.741±10.02 4.467±3.38 9.966±0.00 2.915±2.23 8.793±7.60 3.749±2.23 6.138±3.85 4.798±0.00 8.582±5.47 3.809±0.65 30.954±0.00
ENST00000380708 N/A N/A N/A 3.920±0.00 N/A 1.338±0.00 0.849±0.38 1.135±0.00 N/A N/A N/A 4.766±3.38 1.753±0.84 N/A
ENST00000380713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.820±0.00 N/A N/A
ENST00000398753 N/A N/A N/A 12.758±8.53 N/A 5.221±0.00 2.952±0.00 N/A N/A N/A 6.146±0.00 10.309±0.00 5.607±1.80 N/A
ENST00000415847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466787 N/A N/A 0.820±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.672±0.00 12.226±0.00 N/A
ENST00000490860 N/A N/A N/A N/A N/A N/A N/A N/A 1.785±0.00 N/A N/A N/A N/A N/A
ENST00000623703 N/A N/A N/A N/A N/A N/A 0.192±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000185437 ENST00000333634 N/A 0.375±0.00 N/A 1.589±1.37 4.058±0.00 5.345±4.53 10.597±6.84 1.216±0.00 1.864±1.73 0.336±0.21 18.350±4.40 0.835±0.42 0.603±0.19 2.699±0.00
ENST00000380631 N/A N/A 0.296±0.00 1.964±1.66 N/A 0.266±0.00 8.000±0.00 N/A 0.494±0.00 N/A N/A 0.841±0.38 0.343±0.00 1.451±0.00
ENST00000380634 0.275±0.00 1.385±0.00 N/A 3.234±2.74 6.666±0.00 12.580±0.00 10.874±0.00 1.658±0.56 0.340±0.00 1.740±0.00 36.522±0.00 N/A 0.369±0.11 3.051±1.43
ENST00000380637 N/A N/A N/A 2.418±2.12 0.296±0.00 N/A N/A N/A N/A 0.773±0.00 N/A 0.651±0.46 N/A 2.461±0.22
ENST00000423596 1.078±0.00 4.461±0.00 N/A N/A 12.716±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440288 0.369±0.00 N/A N/A N/A N/A N/A N/A 1.789±0.00 N/A N/A N/A 1.309±0.02 1.260±0.60 11.576±0.00
ENST00000447939 0.268±0.00 N/A N/A N/A N/A N/A N/A 1.441±0.00 0.724±0.00 N/A 16.270±0.00 N/A 0.574±0.00 3.542±0.00
ENST00000452550 N/A N/A N/A N/A N/A N/A 0.830±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000458295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.133±0.00
ENSG00000228349 ENST00000431743 N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A N/A 0.035±0.00 2.338±0.00 N/A N/A N/A
ENSG00000235808 ENST00000450079 0.379±0.00 0.268±0.00 N/A 0.100±0.00 0.048±0.00 0.639±0.00 0.461±0.42 0.372±0.00 N/A 0.047±0.00 0.193±0.00 0.082±0.00 N/A 0.372±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040666 ENSMUST00000048770 1.376±1.26 0.556±0.13 71.397±7.34 0.153±0.07 6.549±5.39 1.037±0.30 34.850±1.18 0.518±0.54 0.204±0.18 0.750±0.12 318.452±13.97 2.212±0.87 1.334±2.02 0.420±0.19
ENSMUST00000123728 N/A N/A N/A N/A 5.480±0.00 N/A N/A N/A 0.070±0.04 N/A N/A 3.678±3.01 0.321±0.14 0.308±0.00
ENSMUST00000129904 N/A 0.450±0.00 N/A 0.235±0.00 N/A N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A 0.626±0.00
ENSMUST00000132424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145069 7.535±4.41 1.808±0.56 N/A 0.318±0.14 26.373±15.24 6.678±1.59 87.210±9.04 1.783±0.41 0.168±0.06 3.884±1.54 N/A 7.485±4.02 0.443±0.32 0.481±0.24
ENSMUST00000157060 N/A N/A N/A 1.144±0.00 N/A N/A N/A N/A N/A N/A N/A 10.724±0.00 0.889±0.29 N/A
ENSMUST00000166952 N/A N/A N/A 0.600±0.00 N/A N/A N/A N/A 0.219±0.00 N/A N/A N/A 0.744±0.00 N/A
ENSMUST00000171181 N/A N/A N/A 0.366±0.00 N/A N/A N/A N/A N/A N/A N/A 19.423±3.95 0.445±0.18 0.352±0.00
ENSMUSG00000045275 ENSMUST00000054855 N/A 0.447±0.13 N/A N/A 0.226±0.00 0.132±0.03 N/A 0.053±0.01 N/A 0.222±0.01 N/A 0.924±0.36 0.079±0.00 21.505±22.35
ENSMUST00000113804 0.256±0.12 0.428±0.19 0.318±0.07 0.502±0.25 0.168±0.10 0.150±0.05 0.107±0.04 0.068±0.04 0.017±0.00 0.283±0.12 0.257±0.04 0.937±0.66 0.194±0.13 20.149±14.91
ENSMUST00000142620 N/A N/A N/A 0.128±0.00 0.073±0.00 0.075±0.02 N/A N/A N/A N/A N/A N/A 0.023±0.00 3.456±0.18
ENSMUST00000154445 N/A 0.369±0.04 0.501±0.00 0.850±0.15 0.158±0.06 0.091±0.03 0.085±0.04 0.126±0.00 0.038±0.02 0.222±0.00 0.070±0.02 0.978±0.19 0.089±0.05 N/A

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