C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat containing 8D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000046079 Lrrc8d 10090 + 5:105699969-105832436 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000060531 Lrrc8d-001 105699969-105815215 protein_coding
  ENSMUST00000120847 Lrrc8d-002 105700789-105815210 protein_coding
  ENSMUST00000127686 Lrrc8d-006 105731784-105811848 protein_coding
  ENSMUST00000134605 Lrrc8d-009 105824511-105832435 processed_transcript
  ENSMUST00000135776 Lrrc8d-004 105700866-105734238 processed_transcript
  ENSMUST00000140081 Lrrc8d-010 105732230-105832436 processed_transcript
  ENSMUST00000140608 Lrrc8d-003 105700810-105734240 retained_intron
  ENSMUST00000149831 Lrrc8d-008 105731990-105813639 processed_transcript
  ENSMUST00000154807 Lrrc8d-007 105732063-105812004 protein_coding
  ENSMUST00000156630 Lrrc8d-005 105731389-105811837 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060531ENSMUST00000120847ENSMUST00000135776ENSMUST00000154807
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060531 4.718±0.63 3.587±0.73 1.092±0.61 5.637±2.64 1.902±0.89 2.611±0.59 1.082±0.16 5.624±2.16 1.248±0.47 4.179±1.56 0.480±0.23 3.835±1.49 5.669±1.77 1.079±0.59
ENSMUST00000120847 1.868±0.00 3.224±0.55 N/A N/A 1.620±0.32 N/A N/A 3.959±1.61 1.858±0.79 2.150±0.04 N/A 1.609±0.81 2.069±0.00 0.581±0.28
ENSMUST00000135776 N/A N/A N/A 1.162±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.540±0.96 N/A
ENSMUST00000154807 N/A 9.397±1.53 N/A N/A 3.943±0.00 N/A N/A N/A N/A N/A N/A 5.266±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069B CIL_00069B_0002 CGP 5:105699969-105915818

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0006811 IEA ion transport
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044146 lrrc8db leucine rich repeat containing 8 family, member Db protein_coding Danio_rerio
ENSDARG00000062113 lrrc8da leucine rich repeat containing 8 family, member Da protein_coding Danio_rerio
ENSG00000171492 LRRC8D leucine rich repeat containing 8 family, member D protein_coding Homo_sapiens

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