C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 8D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120847 Lrrc8d-002 ENSMUSG00000046079 10090 + 5:105700789-105815210 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastKidneyLiverLungOvaryPlacentaTestisENSMUST00000120847
Transcript ID Adipose Adrenal Breast Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000120847 1.868±0.00 3.224±0.55 1.620±0.32 3.959±1.61 1.858±0.79 2.150±0.04 1.609±0.81 2.069±0.00 0.581±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069B CIL_00069B_0002 CGP 5:105699969-105915818

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0006811 IEA ion transport
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148138 lrrc8a-001 protein_coding Danio_rerio 0.0000004 62
ENST00000337338 LRRC8D-001 protein_coding Homo_sapiens 0 3096
ENST00000370453 RP11-302M6.4-001 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000394593 LRRC8D-002 protein_coding Homo_sapiens 0 3243
ENST00000414841 LRRC8D-003 protein_coding Homo_sapiens 0 553
ENST00000441269 LRRC8D-007 protein_coding Homo_sapiens 0 883
ENST00000525774 LRRC8D-004 protein_coding Homo_sapiens 6e-38 161
ENST00000527156 LRRC8D-006 protein_coding Homo_sapiens 0 774
ENST00000532201 LRRC8D-005 protein_coding Homo_sapiens 0 555

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