C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 8D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060531 Lrrc8d-001 ENSMUSG00000046079 10090 + 5:105699969-105815215 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060531
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060531 4.718±0.63 3.587±0.73 1.092±0.61 5.637±2.64 1.902±0.89 2.611±0.59 1.082±0.16 5.624±2.16 1.248±0.47 4.179±1.56 0.480±0.23 3.835±1.49 5.669±1.77 1.079±0.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069B CIL_00069B_0002 CGP 5:105699969-105915818

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0006811 IEA ion transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148138 lrrc8a-001 protein_coding Danio_rerio 0.0000004 62
ENST00000337338 LRRC8D-001 protein_coding Homo_sapiens 0 3319
ENST00000370453 RP11-302M6.4-001 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000394593 LRRC8D-002 protein_coding Homo_sapiens 0 3096
ENST00000414841 LRRC8D-003 protein_coding Homo_sapiens 0 551
ENST00000441269 LRRC8D-007 protein_coding Homo_sapiens 0 883
ENST00000525774 LRRC8D-004 protein_coding Homo_sapiens 0 411
ENST00000527156 LRRC8D-006 protein_coding Homo_sapiens 0 774
ENST00000532201 LRRC8D-005 protein_coding Homo_sapiens 0 551

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