C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: expressed sequence C87436
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000046679 C87436 10090 + 6:86438374-86473500 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000050497 C87436-001 86438374-86470388 protein_coding
  ENSMUST00000113698 C87436-004 86438727-86470388 protein_coding
  ENSMUST00000113700 C87436-002 86438692-86470388 protein_coding
  ENSMUST00000133753 C87436-005 86443813-86473500 nonsense_mediated_decay
  ENSMUST00000141972 C87436-003 86438692-86470388 nonsense_mediated_decay
  ENSMUST00000143430 C87436-006 86438708-86439488 processed_transcript
  ENSMUST00000148768 C87436-007 86464040-86469947 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050497ENSMUST00000113698ENSMUST00000113700ENSMUST00000141972ENSMUST00000143430
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050497 2.482±1.09 N/A 4.084±0.65 2.157±0.49 2.662±1.11 1.913±0.67 1.477±0.44 3.109±0.81 1.663±0.81 2.318±0.75 1.103±0.25 4.276±2.08 1.508±0.60 15.583±3.42
ENSMUST00000113698 1.696±0.00 1.234±0.47 2.544±0.87 2.623±0.83 1.151±0.03 1.287±0.00 0.599±0.25 1.993±0.34 1.633±0.75 0.961±0.12 0.687±0.15 2.922±1.83 1.316±0.50 7.451±0.37
ENSMUST00000113700 1.372±0.00 2.987±1.33 N/A 0.709±0.14 1.896±0.69 0.964±0.00 1.862±0.00 2.368±0.99 N/A N/A 0.430±0.00 4.058±1.86 1.549±0.13 14.709±7.59
ENSMUST00000141972 N/A N/A 1.740±0.28 1.024±0.33 N/A N/A N/A N/A 0.867±0.13 0.958±0.00 0.496±0.16 N/A 0.630±0.22 N/A
ENSMUST00000143430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.555±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0002 VISTA 6:86179085-86780169

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059636 C5H2orf42 chromosome 2 open reading frame 42 protein_coding Danio_rerio
ENSG00000115998 C2orf42 chromosome 2 open reading frame 42 protein_coding Homo_sapiens

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