C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vesicle amine transport protein 1 homolog-like (T. californica)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000046844 Vat1l 10090 + 8:114205612-114374071 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049509 Vat1l-001 114205630-114374071 protein_coding
  ENSMUST00000124143 Vat1l-004 114368116-114374070 retained_intron
  ENSMUST00000142591 Vat1l-003 114205612-114230325 processed_transcript
  ENSMUST00000150963 Vat1l-002 114205634-114230319 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049509ENSMUST00000124143ENSMUST00000142591ENSMUST00000150963
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049509 0.455±0.09 2.513±0.43 0.426±0.06 22.276±2.71 2.560±0.93 1.147±0.03 0.480±0.16 0.541±0.09 0.026±0.01 0.350±0.13 0.351±0.16 0.064±0.06 0.079±0.03 0.184±0.10
ENSMUST00000124143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A 0.014±0.00
ENSMUST00000142591 N/A N/A N/A N/A N/A N/A N/A 0.508±0.00 N/A N/A N/A N/A 0.216±0.00 N/A
ENSMUST00000150963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.305±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OI CIL_0003OI_0002 CGP 8:114133557-114374071
CIL_0008I7 CIL_0008I7_0002 VISTA 8:114199211-114800511
CIL_0004YB CIL_0004YB_0003 CGP 8:114205612-114425846

Gene Ontology
GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding
GO:0016491 IEA oxidoreductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002502 vat1l vesicle amine transport protein 1 homolog (T. californica)-like protein_coding Danio_rerio
ENSG00000171724 VAT1L vesicle amine transport 1-like protein_coding Homo_sapiens

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