C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle amine transport protein 1 homolog-like (T. californica)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049509 Vat1l-001 ENSMUSG00000046844 10090 + 8:114205630-114374071 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049509
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049509 0.455±0.09 2.513±0.43 0.426±0.06 22.276±2.71 2.560±0.93 1.147±0.03 0.480±0.16 0.541±0.09 0.026±0.01 0.350±0.13 0.351±0.16 0.064±0.06 0.079±0.03 0.184±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OI CIL_0003OI_0002 CGP 8:114133557-114374071
CIL_0008I7 CIL_0008I7_0002 VISTA 8:114199211-114800511
CIL_0004YB CIL_0004YB_0003 CGP 8:114205612-114425846

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding
GO:0016491 IEA oxidoreductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000126956 vat1l-201 protein_coding Danio_rerio 0 584
ENST00000302536 VAT1L-001 protein_coding Homo_sapiens 0 1840
ENST00000563850 VAT1L-002 processed_transcript Homo_sapiens 0 416

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