C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: clathrin, heavy polypeptide (Hc)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047126 Cltc 10090 - 11:86694351-86757565 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000060766 Cltc-006 86694655-86757501 protein_coding
  ENSMUST00000103186 Cltc-001 86694351-86757565 protein_coding
  ENSMUST00000124385 Cltc-002 86695317-86703697 protein_coding
  ENSMUST00000133501 Cltc-004 86724198-86726452 processed_transcript
  ENSMUST00000134999 Cltc-003 86700938-86702430 processed_transcript
  ENSMUST00000141152 Cltc-005 86723278-86726483 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060766ENSMUST00000103186ENSMUST00000124385
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060766 14.431±3.43 55.212±28.04 12.310±3.80 39.113±29.20 27.284±9.47 17.008±7.71 9.429±1.17 19.320±5.66 18.148±4.90 8.247±1.85 5.399±0.00 28.807±14.90 55.840±16.77 9.850±6.70
ENSMUST00000103186 27.387±11.74 49.546±25.24 17.665±0.22 20.671±5.75 36.395±25.54 41.177±18.35 6.159±1.49 24.367±11.09 13.629±3.43 49.881±11.26 4.068±0.28 49.208±19.42 25.383±7.14 12.771±4.32
ENSMUST00000124385 N/A N/A N/A N/A N/A N/A 16.053±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VS CIL_0008VS_0002 VISTA 11:86270110-86871719
CIL_0008Y2 CIL_0008Y2_0002 VISTA 11:86286196-86887829
CIL_00081F CIL_00081F_0002 VISTA 11:86323484-86925483
CIL_0004QV CIL_0004QV_0002 CGP 11:86683985-86757565

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003725 ISO double-stranded RNA binding
GO:0005198 IEA structural molecule activity
GO:0005739 IDA mitochondrion
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0019901 IPI protein kinase binding
GO:0030117 IDA membrane coat
GO:0030130 IEA clathrin coat of trans-Golgi network vesicle
GO:0030132 IEA clathrin coat of coated pit
GO:0031523 ISO Myb complex
GO:0043234 ISO protein complex
GO:0090307 ISO spindle assembly involved in mitosis
GO:1900126 ISS negative regulation of hyaluronan biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043493 cltca clathrin, heavy polypeptide a (Hc) protein_coding Danio_rerio
ENSDARG00000090716 cltcb clathrin, heavy polypeptide b (Hc) protein_coding Danio_rerio
ENSG00000141367 CLTC clathrin, heavy chain (Hc) protein_coding Homo_sapiens

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