C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: clathrin, heavy polypeptide (Hc)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060766 Cltc-006 ENSMUSG00000047126 10090 - 11:86694655-86757501 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060766
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060766 14.431±3.43 55.212±28.04 12.310±3.80 39.113±29.20 27.284±9.47 17.008±7.71 9.429±1.17 19.320±5.66 18.148±4.90 8.247±1.85 5.399±0.00 28.807±14.90 55.840±16.77 9.850±6.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VS CIL_0008VS_0002 VISTA 11:86270110-86871719
CIL_0008Y2 CIL_0008Y2_0002 VISTA 11:86286196-86887829
CIL_00081F CIL_00081F_0002 VISTA 11:86323484-86925483
CIL_0004QV CIL_0004QV_0002 CGP 11:86683985-86757565

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 ISO double-stranded RNA binding
GO:0005198 IEA structural molecule activity
GO:0005739 IDA mitochondrion
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IDA membrane coat
GO:0030130 IEA clathrin coat of trans-Golgi network vesicle
GO:0030132 IEA clathrin coat of coated pit
GO:0031523 ISO Myb complex
GO:0043234 ISO protein complex
GO:0090307 ISO spindle assembly involved in mitosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269122 CLTC-001 protein_coding Homo_sapiens 0 8395
ENST00000393043 CLTC-002 protein_coding Homo_sapiens 0 7125
ENST00000466513 CLTC-006 retained_intron Homo_sapiens 0 793
ENST00000472129 CLTC-004 retained_intron Homo_sapiens 0 636
ENST00000472651 CLTC-008 protein_coding Homo_sapiens 0 867
ENST00000475458 CLTC-009 protein_coding Homo_sapiens 0 503
ENST00000483176 CLTC-005 nonsense_mediated_decay Homo_sapiens 0 737
ENST00000496076 CLTC-007 retained_intron Homo_sapiens 0 226
ENST00000498711 CLTC-003 retained_intron Homo_sapiens 0 1397
ENST00000579456 CLTC-010 protein_coding Homo_sapiens 0 2440
ENST00000579815 CLTC-012 processed_transcript Homo_sapiens 0 627
ENST00000580081 CLTC-014 protein_coding Homo_sapiens 0 883
ENST00000584313 CLTC-011 nonsense_mediated_decay Homo_sapiens 0 665
ENST00000585198 CLTC-013 retained_intron Homo_sapiens 0 250
ENST00000587935 PTRH2-005 processed_transcript Homo_sapiens 0 187
ENST00000621829 CLTC-201 protein_coding Homo_sapiens 0 8462

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