C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055949 Pcdhb18-201 ENSMUSG00000048347 10090 + 18:37489465-37494503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055949
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055949 0.573±0.47 1.605±0.23 0.655±0.03 1.048±0.25 0.246±0.04 0.338±0.16 0.424±0.10 0.279±0.10 0.029±0.01 0.851±0.04 0.086±0.03 0.826±0.56 0.020±0.01 0.052±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000Q CGP 18:37485021-37494503
CIL_00062S CIL_00062S_000U CGP 18:37489465-37504127

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231134 PCDHB5-001 protein_coding Homo_sapiens 0 898
ENST00000239446 PCDHB10-001 protein_coding Homo_sapiens 0 1919
ENST00000316105 PCDHB9-001 protein_coding Homo_sapiens 0 1831
ENST00000515856 PCDHB10-201 protein_coding Homo_sapiens 0 1919
ENST00000543635 PCDHB3-201 protein_coding Homo_sapiens 0 939
ENST00000618012 PCDHGB9P-001 unprocessed_pseudogene Homo_sapiens 0.00000000000001 86
ENST00000623915 PCDHB5-002 protein_coding Homo_sapiens 0 784

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