C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048490 Nrip1 10090 - 16:76287400-76373827 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000054178 Nrip1-003 76290862-76373049 protein_coding
  ENSMUST00000121927 Nrip1-001 76287400-76373827 protein_coding
  ENSMUST00000128871 Nrip1-004 76328495-76373040 retained_intron
  ENSMUST00000140483 Nrip1-006 76294646-76323658 protein_coding
  ENSMUST00000141182 Nrip1-005 76328283-76373037 retained_intron
  ENSMUST00000145649 Nrip1-002 76351589-76373049 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054178ENSMUST00000121927ENSMUST00000145649
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054178 3.530±0.32 2.409±0.00 N/A 1.414±0.00 1.179±0.45 2.135±0.89 0.741±0.22 1.265±0.44 0.552±0.21 1.002±0.18 N/A 2.842±1.16 3.139±1.44 0.866±0.16
ENSMUST00000121927 3.025±0.00 1.876±0.00 0.580±0.00 0.631±0.31 1.319±0.00 N/A 0.267±0.00 N/A 1.013±0.00 N/A 2.314±0.70 5.222±3.03 3.314±3.13 N/A
ENSMUST00000145649 N/A 4.575±0.67 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031Y CIL_00031Y_0002 CGP 16:75858793-76373827

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 IPI histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001046 ISS core promoter sequence-specific DNA binding
GO:0001543 IMP ovarian follicle rupture
GO:0003713 IDA transcription coactivator activity
GO:0003714 IDA transcription corepressor activity
GO:0005102 IPI receptor binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0007623 IEA circadian rhythm
GO:0016607 IDA nuclear speck
GO:0019915 IMP lipid storage
GO:0030054 IEA cell junction
GO:0030331 IEA estrogen receptor binding
GO:0030728 IMP ovulation
GO:0032922 IMP circadian regulation of gene expression
GO:0035257 IEA nuclear hormone receptor binding
GO:0035259 IEA glucocorticoid receptor binding
GO:0042826 IPI histone deacetylase binding
GO:0042974 IPI retinoic acid receptor binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046965 IPI retinoid X receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068894 nrip1b nuclear receptor interacting protein 1b protein_coding Danio_rerio
ENSDARG00000068965 nrip1a nuclear receptor interacting protein 1a protein_coding Danio_rerio
ENSG00000180530 NRIP1 nuclear receptor interacting protein 1 protein_coding Homo_sapiens

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