C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121927 Nrip1-001 ENSMUSG00000048490 10090 - 16:76287400-76373827 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartLiverMuscleOvaryPlacentaENSMUST00000121927
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Liver Muscle Ovary Placenta
ENSMUST00000121927 3.025±0.00 1.876±0.00 0.580±0.00 0.631±0.31 1.319±0.00 0.267±0.00 1.013±0.00 2.314±0.70 5.222±3.03 3.314±3.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031Y CIL_00031Y_0002 CGP 16:75858793-76373827

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IPI histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001046 ISS core promoter sequence-specific DNA binding
GO:0001543 IMP ovarian follicle rupture
GO:0003713 IDA transcription coactivator activity
GO:0003714 IDA transcription corepressor activity
GO:0005102 IPI receptor binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0007623 IEA circadian rhythm
GO:0016607 IDA nuclear speck
GO:0019915 IMP lipid storage
GO:0030054 IEA cell junction
GO:0030331 IEA estrogen receptor binding
GO:0030728 IMP ovulation
GO:0032922 IMP circadian regulation of gene expression
GO:0035257 IEA nuclear hormone receptor binding
GO:0035259 IEA glucocorticoid receptor binding
GO:0042826 IPI histone deacetylase binding
GO:0042974 IPI retinoic acid receptor binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046965 IPI retinoid X receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318948 NRIP1-201 protein_coding Homo_sapiens 0 4313
ENST00000400199 NRIP1-001 protein_coding Homo_sapiens 0 4313
ENST00000400202 NRIP1-002 protein_coding Homo_sapiens 0 4313
ENST00000411932 NRIP1-004 protein_coding Homo_sapiens 0 292

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