C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000049323 Smcr8 10090 + 11:60777524-60788287 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056907 Smcr8-201 60777525-60788287 protein_coding
  ENSMUST00000102667 Smcr8-001 60777524-60781067 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056907
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056907 7.126±1.62 8.668±1.35 3.980±0.21 4.513±0.33 9.808±1.38 6.796±0.18 3.102±0.10 7.806±1.46 5.258±1.69 8.247±0.58 4.040±0.29 9.258±2.34 6.419±2.27 2.329±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00002B CIL_00002B_0003 CGP 11:60740058-60788287
CIL_00058O CIL_00058O_0003 CGP 11:60777524-60811718

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015803 smcr8b Smith-Magenis syndrome chromosome region, candidate 8b protein_coding Danio_rerio
ENSDARG00000052818 smcr8a Smith-Magenis syndrome chromosome region, candidate 8a protein_coding Danio_rerio
ENSG00000176994 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 protein_coding Homo_sapiens

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