C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00002B_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000052827-ENSDARG00000052818 CGP 7955 3:40230070-40253732
GeneTranscriptPositionBiotype
ENSDARG00000052818 (smcr8a)
Smith-Magenis syndrome chromosome region, candidate 8a 		ENSDART00000074746 (smcr8a-001) 40250190-40253732 protein_coding
ENSDARG00000052827 (top3a)
topoisomerase (DNA) III alpha 		ENSDART00000102492 (top3a-201) 40230167-40249227 protein_coding
ENSDART00000154562 (top3a-001) 40230070-40249416 protein_coding
ENSDART00000155667 (top3a-002) 40246198-40246727 retained_intron
CIL_00002B_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000177302-ENSG00000176994 CGP 9606 17:18271428-18323203
GeneTranscriptPositionBiotype
ENSG00000176994 (SMCR8)
Smith-Magenis syndrome chromosome region, candidate 8 		ENST00000406438 (SMCR8-001) 18315310-18323203 protein_coding
ENSG00000177302 (TOP3A)
topoisomerase (DNA) III alpha 		ENST00000321105 (TOP3A-001) 18273967-18314993 protein_coding
ENST00000461127 (TOP3A-004) 18302604-18314944 nonsense_mediated_decay
ENST00000469739 (TOP3A-003) 18273967-18307159 retained_intron
ENST00000472959 (TOP3A-005) 18306588-18314960 retained_intron
ENST00000477508 (TOP3A-006) 18280175-18282813 retained_intron
ENST00000489131 (TOP3A-008) 18272838-18274877 protein_coding
ENST00000493648 (TOP3A-007) 18271428-18274958 nonsense_mediated_decay
ENST00000542570 (TOP3A-201) 18273921-18315007 protein_coding
ENST00000580095 (TOP3A-020) 18274804-18314703 protein_coding
ENST00000580713 (TOP3A-014) 18308682-18314812 retained_intron
ENST00000581536 (TOP3A-012) 18285428-18302361 nonsense_mediated_decay
ENST00000582122 (TOP3A-019) 18282791-18290916 nonsense_mediated_decay
ENST00000582230 (TOP3A-017) 18307526-18314969 processed_transcript
ENST00000582981 (TOP3A-009) 18274724-18315007 nonsense_mediated_decay
ENST00000583328 (TOP3A-018) 18306550-18314774 retained_intron
ENST00000583804 (TOP3A-013) 18290557-18303090 retained_intron
ENST00000584582 (TOP3A-010) 18274228-18314993 nonsense_mediated_decay
ENST00000584669 (TOP3A-011) 18302686-18314930 processed_transcript
ENST00000584887 (TOP3A-016) 18307532-18314970 processed_transcript
ENST00000585031 (TOP3A-015) 18306934-18314974 nonsense_mediated_decay
ENSG00000228000 (RPL7AP65)
ribosomal protein L7a pseudogene 65 		ENST00000418183 (RPL7AP65-001) 18311904-18312651 processed_pseudogene
ENSG00000237382 (RPL21P121)
ribosomal protein L21 pseudogene 121 		ENST00000439258 (RPL21P121-001) 18312760-18313533 processed_pseudogene
CIL_00002B_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000002814-ENSMUSG00000049323 CGP 10090 11:60740058-60788287
GeneTranscriptPositionBiotype
ENSMUSG00000002814 (Top3a)
topoisomerase (DNA) III alpha 		ENSMUST00000002891 (Top3a-002) 60740058-60777365 protein_coding
ENSMUST00000102668 (Top3a-003) 60741891-60777265 protein_coding
ENSMUST00000117743 (Top3a-001) 60740059-60777287 protein_coding
ENSMUST00000120417 (Top3a-006) 60742234-60777264 protein_coding
ENSMUST00000124799 (Top3a-005) 60749457-60752678 retained_intron
ENSMUST00000130068 (Top3a-004) 60761732-60777299 protein_coding
ENSMUSG00000020534 (Shmt1)
serine hydroxymethyltransferase 1 (soluble) 		ENSMUST00000018744 (Shmt1-001) 60788104-60811265 protein_coding
ENSMUST00000124227 (Shmt1-003) 60792949-60797853 retained_intron
ENSMUST00000135081 (Shmt1-002) 60789596-60793173 retained_intron
ENSMUST00000172659 (Shmt1-009) 60804345-60811718 processed_transcript
ENSMUST00000172804 (Shmt1-011) 60789248-60794997 retained_intron
ENSMUST00000173260 (Shmt1-004) 60797245-60811091 retained_intron
ENSMUST00000173698 (Shmt1-008) 60798652-60802670 processed_transcript
ENSMUST00000174093 (Shmt1-005) 60788901-60799403 processed_transcript
ENSMUST00000174174 (Shmt1-007) 60789144-60807021 nonsense_mediated_decay
ENSMUST00000174214 (Shmt1-010) 60789144-60807021 protein_coding
ENSMUST00000174719 (Shmt1-006) 60789144-60807021 protein_coding
ENSMUSG00000049323 (Smcr8)
Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) 		ENSMUST00000056907 (Smcr8-201) 60777525-60788287 protein_coding
ENSMUST00000102667 (Smcr8-001) 60777524-60781067 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00002B_0001ENSDARG00000052818ENSDART00000074746ENSDARG00000052827ENSDART00000102492ENSDART00000154562ENSDART00000155667CIL_00002B_0002ENSG00000176994ENST00000406438ENSG00000177302ENST00000321105ENST00000461127ENST00000469739ENST00000472959ENST00000477508ENST00000489131ENST00000493648ENST00000542570ENST00000580095ENST00000580713ENST00000581536ENST00000582122ENST00000582230ENST00000582981ENST00000583328ENST00000583804ENST00000584582ENST00000584669ENST00000584887ENST00000585031ENSG00000228000ENST00000418183ENSG00000237382ENST00000439258CIL_00002B_0003ENSMUSG00000002814ENSMUST00000002891ENSMUST00000102668ENSMUST00000117743ENSMUST00000120417ENSMUST00000124799ENSMUST00000130068ENSMUSG00000020534ENSMUST00000018744ENSMUST00000124227ENSMUST00000135081ENSMUST00000172659ENSMUST00000172804ENSMUST00000173260ENSMUST00000173698ENSMUST00000174093ENSMUST00000174174ENSMUST00000174214ENSMUST00000174719ENSMUSG00000049323ENSMUST00000056907ENSMUST00000102667
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00002B_0001ENSDARG00000052818ENSDART00000074746ENSDARG00000052827ENSDART00000102492ENSDART00000154562ENSDART00000155667CIL_00002B_0002ENSG00000176994ENST00000406438ENSG00000177302ENST00000321105ENST00000469739ENST00000542570ENST00000580095ENST00000582981ENST00000583328ENST00000583804ENST00000584582ENST00000585031ENSG00000228000ENST00000418183ENSG00000237382ENST00000439258CIL_00002B_0003ENSMUSG00000002814ENSMUST00000002891ENSMUST00000102668ENSMUST00000117743ENSMUST00000120417ENSMUSG00000020534ENSMUST00000018744ENSMUST00000173260ENSMUST00000174093ENSMUST00000174214ENSMUSG00000049323ENSMUST00000056907
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000052818 ENSDART00000074746 N/A N/A N/A N/A N/A N/A 1.840±0.00 N/A 1.067±0.00 N/A 0.582±0.00 N/A N/A N/A
ENSDARG00000052827 ENSDART00000102492 N/A N/A N/A 0.263±0.09 N/A N/A 1.403±0.00 0.359±0.00 0.109±0.00 N/A N/A N/A N/A N/A
ENSDART00000154562 N/A N/A N/A 0.350±0.23 N/A N/A 0.319±0.06 1.152±1.09 N/A N/A 0.265±0.00 N/A N/A N/A
ENSDART00000155667 N/A N/A N/A N/A N/A N/A 1.410±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000176994 ENST00000406438 N/A N/A 1.741±0.00 1.659±0.05 N/A 1.541±0.36 1.264±0.00 1.578±0.64 2.025±0.75 1.956±0.45 1.779±0.04 1.293±0.00 0.994±0.00 N/A
ENSG00000177302 ENST00000321105 N/A N/A N/A N/A 0.999±0.00 1.129±0.00 0.400±0.28 N/A 1.157±0.14 N/A 1.111±0.00 1.385±0.34 2.300±1.02 N/A
ENST00000461127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469739 N/A N/A N/A N/A N/A 1.057±0.00 N/A N/A N/A N/A 0.168±0.00 2.605±0.00 2.229±0.00 N/A
ENST00000472959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542570 1.128±0.00 3.064±0.00 N/A N/A N/A N/A N/A 0.919±0.00 N/A 1.034±0.00 N/A 0.738±0.00 N/A N/A
ENST00000580095 N/A N/A N/A N/A 0.402±0.00 N/A N/A 0.392±0.00 1.386±0.00 N/A N/A 2.021±0.33 2.857±0.00 3.565±2.37
ENST00000580713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582981 N/A N/A N/A N/A N/A N/A N/A 0.883±0.00 N/A N/A N/A N/A N/A 1.414±0.00
ENST00000583328 N/A N/A 1.341±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583804 N/A N/A N/A N/A 0.785±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584582 0.946±0.00 N/A N/A 1.301±0.00 N/A 1.049±0.00 N/A 1.900±0.00 0.771±0.00 N/A N/A 1.348±0.00 1.564±0.00 2.921±0.78
ENST00000584669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585031 N/A N/A N/A N/A N/A N/A 1.427±0.00 N/A N/A N/A 0.615±0.00 N/A N/A N/A
ENSG00000228000 ENST00000418183 N/A 0.044±0.00 N/A 0.096±0.00 0.340±0.00 N/A N/A N/A 0.085±0.00 0.286±0.12 N/A 0.365±0.46 0.083±0.00 0.040±0.00
ENSG00000237382 ENST00000439258 N/A 0.056±0.00 N/A N/A 0.235±0.00 N/A 0.058±0.01 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002814 ENSMUST00000002891 2.049±0.26 1.505±0.63 3.138±0.10 2.831±1.67 2.848±0.35 2.924±0.62 0.707±0.30 1.946±0.45 2.566±1.45 2.709±0.26 0.732±0.27 3.369±1.38 4.031±0.97 6.488±1.43
ENSMUST00000102668 0.867±0.39 1.248±0.56 N/A N/A 0.860±0.08 0.719±0.00 0.263±0.01 0.553±0.00 0.442±0.13 N/A N/A 3.179±0.09 0.824±0.39 1.315±0.00
ENSMUST00000117743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.299±0.00 2.134±0.60 N/A N/A
ENSMUST00000120417 N/A N/A N/A 0.526±0.00 N/A N/A 0.633±0.00 N/A N/A N/A 0.345±0.00 1.359±0.00 2.528±0.59 N/A
ENSMUST00000124799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000020534 ENSMUST00000018744 3.531±0.57 13.576±5.35 4.516±0.26 4.018±1.28 4.156±0.22 8.832±0.56 1.507±0.22 28.666±8.07 43.736±18.03 N/A 2.840±0.46 6.599±0.88 10.973±5.19 4.751±1.21
ENSMUST00000124227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.555±1.78
ENSMUST00000173698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174093 N/A N/A N/A N/A N/A N/A N/A 17.028±0.74 50.379±11.14 N/A N/A N/A 9.478±0.00 6.094±0.32
ENSMUST00000174174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174214 N/A N/A N/A N/A N/A N/A N/A N/A 58.496±16.05 N/A N/A 8.227±0.00 N/A N/A
ENSMUST00000174719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000049323 ENSMUST00000056907 7.126±1.62 8.668±1.35 3.980±0.21 4.513±0.33 9.808±1.38 6.796±0.18 3.102±0.10 7.806±1.46 5.258±1.69 8.247±0.58 4.040±0.29 9.258±2.34 6.419±2.27 2.329±0.60
ENSMUST00000102667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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