C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Smith-Magenis syndrome chromosome region, candidate 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000176994 SMCR8 9606 + 17:18315310-18323203 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000406438 SMCR8-001 18315310-18323203 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000406438
Transcript ID Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000406438 1.741±0.00 1.659±0.05 1.541±0.36 1.264±0.00 1.578±0.64 2.025±0.75 1.956±0.45 1.779±0.04 1.293±0.00 0.994±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00002B CIL_00002B_0002 CGP 17:18271428-18323203
CIL_00058O CIL_00058O_0002 CGP 17:18315310-18363563

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015803 smcr8b Smith-Magenis syndrome chromosome region, candidate 8b protein_coding Danio_rerio
ENSDARG00000052818 smcr8a Smith-Magenis syndrome chromosome region, candidate 8a protein_coding Danio_rerio
ENSMUSG00000049323 Smcr8 Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) protein_coding Mus_musculus

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