C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00058O_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000052818-ENSDARG00000052816 CGP 7955 3:40250190-40270853
GeneTranscriptPositionBiotype
ENSDARG00000052816 (shmt1)
serine hydroxymethyltransferase 1 (soluble) 		ENSDART00000074737 (shmt1-001) 40255711-40270853 protein_coding
ENSDART00000132225 (shmt1-002) 40263143-40270839 protein_coding
ENSDART00000141578 (shmt1-003) 40263106-40269878 protein_coding
ENSDARG00000052818 (smcr8a)
Smith-Magenis syndrome chromosome region, candidate 8a 		ENSDART00000074746 (smcr8a-001) 40250190-40253732 protein_coding
CIL_00058O_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000176994-ENSG00000176974 CGP 9606 17:18315310-18363563
GeneTranscriptPositionBiotype
ENSG00000176974 (SHMT1)
serine hydroxymethyltransferase 1 (soluble) 		ENST00000316694 (SHMT1-001) 18327873-18363487 protein_coding
ENST00000352886 (SHMT1-201) 18327860-18363563 protein_coding
ENST00000354098 (SHMT1-003) 18328528-18363451 protein_coding
ENST00000395682 (SHMT1-005) 18353510-18363518 retained_intron
ENST00000395684 (SHMT1-004) 18327873-18341655 retained_intron
ENST00000579558 (SHMT1-008) 18340405-18363501 retained_intron
ENST00000580002 (SHMT1-006) 18328470-18363495 nonsense_mediated_decay
ENST00000582352 (SHMT1-010) 18330684-18333439 retained_intron
ENST00000582653 (SHMT1-009) 18347514-18363346 protein_coding
ENST00000583780 (SHMT1-007) 18355979-18363542 protein_coding
ENST00000618902 (SHMT1-202) 18348244-18348672 protein_coding
ENSG00000176994 (SMCR8)
Smith-Magenis syndrome chromosome region, candidate 8 		ENST00000406438 (SMCR8-001) 18315310-18323203 protein_coding
ENSG00000267350 (RP1-178F10.3)
 ENST00000577764 (RP1-178F10.3-002) 18324222-18325897 lincRNA
ENST00000623730 (RP1-178F10.3-001) 18325576-18328055 TEC
CIL_00058O_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000049323-ENSMUSG00000020534 CGP 10090 11:60777524-60811718
GeneTranscriptPositionBiotype
ENSMUSG00000020534 (Shmt1)
serine hydroxymethyltransferase 1 (soluble) 		ENSMUST00000018744 (Shmt1-001) 60788104-60811265 protein_coding
ENSMUST00000124227 (Shmt1-003) 60792949-60797853 retained_intron
ENSMUST00000135081 (Shmt1-002) 60789596-60793173 retained_intron
ENSMUST00000172659 (Shmt1-009) 60804345-60811718 processed_transcript
ENSMUST00000172804 (Shmt1-011) 60789248-60794997 retained_intron
ENSMUST00000173260 (Shmt1-004) 60797245-60811091 retained_intron
ENSMUST00000173698 (Shmt1-008) 60798652-60802670 processed_transcript
ENSMUST00000174093 (Shmt1-005) 60788901-60799403 processed_transcript
ENSMUST00000174174 (Shmt1-007) 60789144-60807021 nonsense_mediated_decay
ENSMUST00000174214 (Shmt1-010) 60789144-60807021 protein_coding
ENSMUST00000174719 (Shmt1-006) 60789144-60807021 protein_coding
ENSMUSG00000049323 (Smcr8)
Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) 		ENSMUST00000056907 (Smcr8-201) 60777525-60788287 protein_coding
ENSMUST00000102667 (Smcr8-001) 60777524-60781067 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00058O_0001ENSDARG00000052816ENSDART00000074737ENSDART00000132225ENSDART00000141578ENSDARG00000052818ENSDART00000074746CIL_00058O_0002ENSG00000176974ENST00000316694ENST00000352886ENST00000354098ENST00000395682ENST00000395684ENST00000579558ENST00000580002ENST00000582352ENST00000582653ENST00000583780ENST00000618902ENSG00000176994ENST00000406438ENSG00000267350ENST00000577764ENST00000623730CIL_00058O_0003ENSMUSG00000020534ENSMUST00000018744ENSMUST00000124227ENSMUST00000135081ENSMUST00000172659ENSMUST00000172804ENSMUST00000173260ENSMUST00000173698ENSMUST00000174093ENSMUST00000174174ENSMUST00000174214ENSMUST00000174719ENSMUSG00000049323ENSMUST00000056907ENSMUST00000102667
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00058O_0001ENSDARG00000052816ENSDART00000074737ENSDARG00000052818ENSDART00000074746CIL_00058O_0002ENSG00000176974ENST00000316694ENST00000352886ENST00000354098ENST00000395684ENST00000580002ENSG00000176994ENST00000406438ENSG00000267350ENST00000577764ENST00000623730CIL_00058O_0003ENSMUSG00000020534ENSMUST00000018744ENSMUST00000173260ENSMUST00000174093ENSMUST00000174214ENSMUSG00000049323ENSMUST00000056907
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000052816 ENSDART00000074737 N/A N/A N/A 2.270±0.46 N/A N/A 3.666±0.42 30.815±26.24 11.538±0.00 N/A 3.731±0.00 N/A N/A N/A
ENSDART00000132225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000052818 ENSDART00000074746 N/A N/A N/A N/A N/A N/A 1.840±0.00 N/A 1.067±0.00 N/A 0.582±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000176974 ENST00000316694 19.998±0.00 6.290±0.00 N/A 3.703±0.00 11.084±9.44 3.209±1.96 2.030±1.54 57.918±46.52 66.150±65.30 5.102±0.00 5.777±0.00 6.890±2.18 6.543±1.96 8.815±0.00
ENST00000352886 N/A N/A 5.496±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000354098 N/A N/A 11.980±0.00 N/A N/A N/A N/A 18.516±0.00 1.745±0.00 N/A N/A 5.589±2.13 4.804±0.46 7.599±0.97
ENST00000395682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395684 N/A N/A 8.230±0.00 1.944±0.00 N/A N/A N/A N/A N/A 2.579±0.00 N/A N/A N/A N/A
ENST00000579558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580002 N/A N/A N/A N/A N/A 3.097±0.00 N/A 14.784±0.00 N/A N/A N/A N/A N/A 7.733±0.00
ENST00000582352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000176994 ENST00000406438 N/A N/A 1.741±0.00 1.659±0.05 N/A 1.541±0.36 1.264±0.00 1.578±0.64 2.025±0.75 1.956±0.45 1.779±0.04 1.293±0.00 0.994±0.00 N/A
ENSG00000267350 ENST00000577764 N/A N/A N/A N/A 4.327±0.00 2.549±0.00 N/A N/A 1.951±0.00 2.378±0.00 N/A N/A N/A N/A
ENST00000623730 N/A 3.789±0.00 N/A N/A N/A 1.369±0.00 N/A N/A N/A N/A N/A 4.739±0.00 1.765±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020534 ENSMUST00000018744 3.531±0.57 13.576±5.35 4.516±0.26 4.018±1.28 4.156±0.22 8.832±0.56 1.507±0.22 28.666±8.07 43.736±18.03 N/A 2.840±0.46 6.599±0.88 10.973±5.19 4.751±1.21
ENSMUST00000124227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.555±1.78
ENSMUST00000173698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174093 N/A N/A N/A N/A N/A N/A N/A 17.028±0.74 50.379±11.14 N/A N/A N/A 9.478±0.00 6.094±0.32
ENSMUST00000174174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174214 N/A N/A N/A N/A N/A N/A N/A N/A 58.496±16.05 N/A N/A 8.227±0.00 N/A N/A
ENSMUST00000174719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000049323 ENSMUST00000056907 7.126±1.62 8.668±1.35 3.980±0.21 4.513±0.33 9.808±1.38 6.796±0.18 3.102±0.10 7.806±1.46 5.258±1.69 8.247±0.58 4.040±0.29 9.258±2.34 6.419±2.27 2.329±0.60
ENSMUST00000102667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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