C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: shisa family member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000050010 Shisa3 10090 + 5:67607883-67623552 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087241 Shisa3-001 67607883-67613992 protein_coding
  ENSMUST00000142843 Shisa3-002 67607969-67623552 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000087241
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000087241 0.948±0.00 1.571±0.19 4.976±1.22 4.943±1.03 4.294±0.78 6.945±0.64 0.131±0.02 1.076±0.05 0.758±0.30 10.851±3.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OI CIL_0007OI_0002 UCNEbase 5:67098377-67633824
CIL_0007YP CIL_0007YP_0002 VISTA 5:67123705-67724669
CIL_0002Z3 CIL_0002Z3_0002 CGP 5:67392147-67623552
CIL_0002Z0 CIL_0002Z0_0002 CGP 5:67607883-67847432

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0007275 IEA multicellular organismal development
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075467 shisa3 shisa homolog 3 (Xenopus laevis) protein_coding Danio_rerio
ENSG00000178343 SHISA3 shisa family member 3 protein_coding Homo_sapiens

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